Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J11
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   0.48 
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ...    25   1.9  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   2.6  
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         25   2.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   3.4  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    25   3.4  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   3.4  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    24   4.5  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    24   5.9  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    23   7.9  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    23   7.9  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    23   7.9  

>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.5 bits (58), Expect = 0.48
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 107 FDDTLEKKRIEKFRISVVCVNMSADAEGVNSAVEQV 214
           F+D+L ++R EK  +   C+N+  + E V   +E +
Sbjct: 791 FEDSLRRERDEKSTLQQKCLNLQYEYENVRIELENL 826


>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 240 ILTSFTSCVTCSTAELTPSASADIFT 163
           I+ + TSC  CS   LTP  S  I T
Sbjct: 181 IIPTITSCYECSLDMLTPKISYPICT 206


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 191  VNSAVEQVTQDVKDVKIENG 250
            +N  +EQ+  D+  V+I NG
Sbjct: 1143 INPPIEQIVHDIPTVRISNG 1162


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 198 ELTPSASADIFTHTTEIRNFSILFFSKVSSNL 103
           +LTPS   D+FT   +++      FS  +SN+
Sbjct: 50  DLTPSELTDLFTSVRKVQQVIEKVFSASASNI 81


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -1

Query: 288  LLFGVPLVASAAVPFSILTSFTSCVTCSTAELTPSASA-DIFTHTTEIRNFSILF---FS 121
            L   +P + S A  FS      S +T  + EL    +  D  ++ ++  +F + F   F 
Sbjct: 1240 LASNLPEMLSIANAFSANVDAPSVMTLLSEELYSIDTVNDAISNLSQNSSFDMKFGLHFP 1299

Query: 120  KVSSNLYQGS 91
            K+S NLY G+
Sbjct: 1300 KISLNLYDGT 1309


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 8/34 (23%)
 Frame = +2

Query: 212 VTQDVKDVKI--------ENGTAAEATNGTPNKS 289
           VT+D+KD++I        +NGT + +TN T  KS
Sbjct: 48  VTKDIKDLRILPKNEIMPKNGTKSPSTNSTKLKS 81


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 276  VPLVASAAVPFSILTSFTSCVTCSTAELTPSAS 178
            +P +    V F ILT   + + C TA LT + S
Sbjct: 1011 IPFIQFIRVHFVILTPMPAVIFCVTAALTVTYS 1043


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 179  DAEGVNSAVEQVTQDVKDVKIENGTAAEATN 271
            DAE  N + E+  ++V  VK ENG +    N
Sbjct: 1318 DAELDNMSNEKAKEEVDHVKSENGESVNEPN 1348


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
 Frame = -1

Query: 234 TSFTSCVTCSTAELTPSASADIFTHTTEIRN-----FSILFFSKVSSNLYQGSVEKTNL 73
           + FTS +T  T   + S    I THT+   N      SI   S  SS     S+  T +
Sbjct: 42  SEFTSTITPETPSSSSSTFVPISTHTSSATNTTSGQLSISSSSSTSSEYSSSSIPITTV 100


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 15  YLRPGFISNFN 47
           +LRPGF+ NFN
Sbjct: 190 FLRPGFMYNFN 200


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 20  TTGFYIEF*LLN*DQTNNKLVFSTDP 97
           TTGF I F LLN  +T    VF+T P
Sbjct: 253 TTGFEISFPLLNDKET--LTVFTTKP 276


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 193 NPFSVRRHIHTHY*NPKFL 137
           N F  +R+ HTH  NP F+
Sbjct: 586 NLFYEKRYSHTHQKNPNFV 604


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,129,329
Number of Sequences: 5004
Number of extensions: 18454
Number of successful extensions: 65
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)