Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J11
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0054 + 16883678-16883719,16884667-16884723,16884852-168849... 32 0.11
09_02_0179 - 5403985-5404356,5404375-5404446 31 0.24
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 28 1.3
07_03_1035 - 23426318-23426562,23426674-23426757,23426880-23427045 28 1.7
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965 27 2.3
02_03_0144 + 15694766-15694883,15694980-15697612 27 4.0
02_05_0886 + 32507324-32507938,32508103-32508252,32508498-325089... 26 5.2
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408... 26 6.9
11_06_0748 - 26884018-26884452 25 9.2
09_03_0140 + 12700740-12700935,12701082-12701515 25 9.2
01_05_0162 + 18759647-18759663,18760128-18760131,18760270-187606... 25 9.2
>03_04_0054 +
16883678-16883719,16884667-16884723,16884852-16884959,
16885028-16885102,16885744-16885833,16885950-16886057,
16886137-16886211,16886371-16886433,16886531-16886924,
16888539-16888651,16888799-16888829,16888987-16889864
Length = 677
Score = 31.9 bits (69), Expect = 0.11
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +2
Query: 101 YRFDDTLEKKRIEKFRISVVCVNMSADAEGVNSAVEQVTQDVKDVKIENGTAAEATNGTP 280
+R + EKK +E+ V A EG N+ V + +++++G + +A
Sbjct: 409 FRLGEEAEKKELEEEAAEVKARAEQAAKEGTNAGVNSGIDTAEALQVKDGKSEDAAKNKR 468
Query: 281 NKSNDNG 301
+ S +NG
Sbjct: 469 DNSAENG 475
>09_02_0179 - 5403985-5404356,5404375-5404446
Length = 147
Score = 30.7 bits (66), Expect = 0.24
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 203 VEQVTQDVKDVKIENGTAAEATNGTPNKSNDNGVP 307
VE ++ D + ++E T TN + + + DNG+P
Sbjct: 9 VELISSDEEHFEVEEATVVNNTNNSDHHAGDNGIP 43
>02_05_1276 +
35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 191 VNSAVEQVTQDVKDVKIENGTAAEATNGTPNKSNDNG 301
V SAV QVT ++K +K+EN N S + G
Sbjct: 735 VKSAVTQVTAEIKSMKLENSRKQPEVESMNNSSINFG 771
>07_03_1035 - 23426318-23426562,23426674-23426757,23426880-23427045
Length = 164
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 89 TDP*YRFDDTLEKKRIEKFRISVVC--VNMSADAEGVNSAVEQVTQDVKDVKIENGTAAE 262
TDP F++ LE R V N+ + EG++++ +++ + + +K+E
Sbjct: 63 TDPATAFEELLEYYRKAGLIEGQVWKRYNIFEEVEGLDNSQDEIKMEEEPMKVEEAVRCR 122
Query: 263 ATNGTPNKSND 295
+ TP+ N+
Sbjct: 123 GRDATPDCPNE 133
>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
Length = 675
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 119 LEKKRIEKFRISVVCVNMSADAEGVNSAVEQVTQDVKDVKIENGTAAEATNGTP 280
+E++ +E +I++ CV+ + + S V ++ +DV+ + + GT TP
Sbjct: 609 IEEEMVEMLQIAMACVSRTPERRPKMSDVVRMLEDVR--RTDTGTRTSTEASTP 660
>02_03_0144 + 15694766-15694883,15694980-15697612
Length = 916
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +2
Query: 122 EKKRIEKFRISVVCVNMSADAEGVNSAVEQVTQDVKDVKIENGTAAEATNGTPNKSN 292
E++R +K+R + + +S D+E S ++ + D GT++ ++G+PN+ N
Sbjct: 537 EEERSDKYRANQLYQGLSLDSEDFMS-IQNFIESQMD-----GTSSSLSSGSPNQGN 587
>02_05_0886 +
32507324-32507938,32508103-32508252,32508498-32508935,
32509038-32509151,32509256-32509852
Length = 637
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 300 PLSLLLFGVPLVASAAVPFSILTSFTSCVTCSTAELTPSAS 178
PL + + SAA F +L+S TS + S A PS+S
Sbjct: 461 PLPVGATAMASTTSAAATFMLLSSTTSSSSVSDASAAPSSS 501
>08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,
4080757-4081589
Length = 1103
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 104 RFDDTLEKKRIEKFRISVVCVNMS 175
+F L + +EKFRIS+ C N S
Sbjct: 1043 KFSWLLRNQYVEKFRISINCENAS 1066
>11_06_0748 - 26884018-26884452
Length = 144
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 208 ASDAGCEGCQDRERNSCGSNQ 270
A+ AG GC+ R+R +CG +
Sbjct: 82 AATAGAGGCRLRQRTACGDGR 102
>09_03_0140 + 12700740-12700935,12701082-12701515
Length = 209
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 208 ASDAGCEGCQDRERNSCGSNQ 270
A+ AG GC+ R+R +CG +
Sbjct: 147 AARAGAGGCRPRQRMACGDGR 167
>01_05_0162 +
18759647-18759663,18760128-18760131,18760270-18760617,
18760801-18761016,18763367-18763435,18763560-18764209,
18764993-18765089,18765170-18765223,18765305-18765435,
18766818-18767008,18767937-18768574
Length = 804
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = -2
Query: 170 YSHTLLKSEISQSFFSLKCHQICIRDQLKKPIYYWFDLSLKVKIRYKTRS 21
Y ++S + FSL C + L++ + ++ S++ +RYK S
Sbjct: 98 YRDVAIESGAMEEIFSLLCKSTITPEMLEQSLCTIWNFSIEENLRYKILS 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,805,097
Number of Sequences: 37544
Number of extensions: 103952
Number of successful extensions: 353
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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