Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J11
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078785-4|AAC27089.3|  609|Caenorhabditis elegans Hypothetical ...    27   2.0  
AF002198-11|AAF99930.2|  311|Caenorhabditis elegans Hypothetical...    27   3.5  
AC006750-2|AAO38570.1|  478|Caenorhabditis elegans Hypothetical ...    27   3.5  
AC006750-1|AAF60535.1|  527|Caenorhabditis elegans Hypothetical ...    27   3.5  
Z69716-1|CAA93526.1|  486|Caenorhabditis elegans Hypothetical pr...    26   4.7  
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr...    26   6.2  
AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical ...    25   8.1  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    25   8.1  

>AF078785-4|AAC27089.3|  609|Caenorhabditis elegans Hypothetical
           protein C04E12.4 protein.
          Length = 609

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 101 YRFDDTLEKKRIEKFRISVVCVNMSADAEGVNSAVEQVTQDVKDVKI 241
           ++F+    +K +EK  I +V +N  AD  G   A  Q ++  KD+ +
Sbjct: 141 WKFNLKSTEKILEKLEIRMVSINNIADGGGKAEACLQPSEVCKDIPV 187


>AF002198-11|AAF99930.2|  311|Caenorhabditis elegans Hypothetical
           protein F35F10.1 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 101 YRFDDTLEKKRIEKFRISVVCVNMSADAEGVNSAVEQVTQDVKDVKI 241
           ++F+    +K +EK  I +V +N  A+  G   A  Q ++  KD+ +
Sbjct: 141 WKFNLKSTRKILEKLEIRMVSINNIANGGGKAEACLQPSETCKDIPV 187


>AC006750-2|AAO38570.1|  478|Caenorhabditis elegans Hypothetical
           protein Y39F10B.1b protein.
          Length = 478

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +2

Query: 80  VFSTDP*YRFDDTLEKKRIEKFRISVVCVNMSADAEGVNSAVEQVTQDVKDVKIENG 250
           V +T+   R+D+  E K  +KF   VV V+  A   G N  + +   ++++ K+ +G
Sbjct: 46  VLNTEGECRWDEVCEFKLSDKFNSVVVAVHAKAKL-GTNELIGRCELELENAKMLHG 101


>AC006750-1|AAF60535.1|  527|Caenorhabditis elegans Hypothetical
           protein Y39F10B.1a protein.
          Length = 527

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = +2

Query: 80  VFSTDP*YRFDDTLEKKRIEKFRISVVCVNMSADAEGVNSAVEQVTQDVKDVKIENG 250
           V +T+   R+D+  E K  +KF   VV V+  A   G N  + +   ++++ K+ +G
Sbjct: 95  VLNTEGECRWDEVCEFKLSDKFNSVVVAVHAKAKL-GTNELIGRCELELENAKMLHG 150


>Z69716-1|CAA93526.1|  486|Caenorhabditis elegans Hypothetical
           protein C04B4.1 protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 15  YLRPGFISNFNF*TEIKPIINWFFQLIPDTD-LMTL*RKKGLRNFGF 152
           YLR  F S+FN    I     W F + PD D + TL        FG+
Sbjct: 269 YLRNYFGSDFNSLVRILEGHKWIFAVFPDKDYVSTLRNLPPFNYFGY 315


>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
           protein K09C4.10 protein.
          Length = 1035

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -2

Query: 152 KSEISQSFFSLKCHQICIRDQLKKPIYYWFDLSLKVKIRYKTRS 21
           + E+S+  F     ++C+ +   K  Y  F   +K   RY+T +
Sbjct: 272 REEVSREKFLWATSRLCVNENTVKYFYAMFKQGVKALERYETEN 315


>AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical
           protein W10G11.5 protein.
          Length = 345

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 264 ASAAVPFSILTSFTSCVTCSTAELTPSASADIFTH 160
           AS   P  ILT+ T+  T +T   TP  +    TH
Sbjct: 83  ASTVTPTPILTTVTTTSTTTTVTTTPIPTTVTSTH 117


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/43 (20%), Positives = 23/43 (53%)
 Frame = -1

Query: 270 LVASAAVPFSILTSFTSCVTCSTAELTPSASADIFTHTTEIRN 142
           +V    +  +I+   +SC TC+T       + ++F+ +T++ +
Sbjct: 24  VVGIIGIVLAIVFGTSSCPTCNTCPTQTQCNTNLFSISTQVNS 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,288,772
Number of Sequences: 27780
Number of extensions: 107610
Number of successful extensions: 444
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)