Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J10
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    98   7e-22
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    87   1e-18
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    74   1e-14
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    28   0.84 
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   1.5  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   1.9  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    26   3.4  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   5.9  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    25   7.8  

>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 97.9 bits (233), Expect = 7e-22
 Identities = 43/91 (47%), Positives = 68/91 (74%)
 Frame = +2

Query: 203 ATSDIVILSGNSHPELADLIAKRLGVRKGGCSVYHKTNRETMVEIADSIRGKNIYIVQTG 382
           A++ I I +GNSHPELA+ +A+R+G+  G  +V   +NRET V I +S+R ++++I+QTG
Sbjct: 2   ASNSIKIFAGNSHPELAEKVARRIGLSLGKVAVVQYSNRETSVTIGESVRDEDVFILQTG 61

Query: 383 TKDVNNNIMELLIMAYACKTSSARSIVGVIP 475
              +N+++MELLIM  AC+++SAR I  +IP
Sbjct: 62  CGSINDHLMELLIMINACRSASARRITAIIP 92


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 87.4 bits (207), Expect = 1e-18
 Identities = 41/86 (47%), Positives = 59/86 (68%)
 Frame = +2

Query: 221 ILSGNSHPELADLIAKRLGVRKGGCSVYHKTNRETMVEIADSIRGKNIYIVQTGTKDVNN 400
           I+ G SHPEL  LI+ RLG+     S+    N ET VEI +S+R K+++I+Q+G+  VN+
Sbjct: 6   IIGGGSHPELLHLISNRLGITPCDVSLKRFANGETSVEIRESVRDKDVFILQSGSSTVND 65

Query: 401 NIMELLIMAYACKTSSARSIVGVIPY 478
           ++MELLI+  ACK  SA+ I  V+PY
Sbjct: 66  SLMELLIIISACKGGSAKRITAVMPY 91


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 73.7 bits (173), Expect = 1e-14
 Identities = 35/88 (39%), Positives = 55/88 (62%)
 Frame = +2

Query: 212 DIVILSGNSHPELADLIAKRLGVRKGGCSVYHKTNRETMVEIADSIRGKNIYIVQTGTKD 391
           ++V+    SHP+L + I + L +  G   +   +N ET V I  S+RG ++YIV   +  
Sbjct: 3   NLVVFGTESHPKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPASGQ 62

Query: 392 VNNNIMELLIMAYACKTSSARSIVGVIP 475
           VN+++MELLIM  ACKT+SA+ +  V+P
Sbjct: 63  VNDHLMELLIMISACKTASAKKVTAVLP 90


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 254 DLIAKRLGVRKGGCSVYHKTNRETMVEIADSIRGKNIYIVQTG 382
           DLI++ LG +  GCS     + E ++  AD IR   ++ V+TG
Sbjct: 24  DLISRALGGQVLGCSDDFFASCENLINPADPIRKAGVF-VETG 65


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 212 DIVILSGNSHPELADLIAKRLGVRKGGCSVYHKTNRE 322
           D++ L  N HP    +   R G  +G C VY +T+++
Sbjct: 100 DVLSLFENFHPIRVIMNYDRAGRSEGSCDVYFETSQD 136


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 300 TEHPPLRTPSRLAIKSANSGCELPLSITMSDVAFP 196
           +EH    TPS   +K  N   ELP S+T  +   P
Sbjct: 562 SEHEMEATPSPALLKKTNKRRELPSSLTKKNTRTP 596


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 170 NRSRKSNMEGNATSDIVIL---SGNSHPELADLIAK 268
           NR    + + N+  D  I+   SGNS PEL DL+ K
Sbjct: 572 NRYGVLHSKSNSVKDAYIIPMPSGNSVPELLDLLPK 607


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +2

Query: 47  QLYKSFNLYEKIYIT*KIKHLFVNKY--GNCKHKAVIRVVGSSNRSRKSNMEGNATSDIV 220
           QLY +  +      T  +    + KY  G  KH + I+ +G S++  K  + GN+     
Sbjct: 35  QLYDASKITSSKRSTSDLHVQLLEKYRNGKVKHASQIKELGLSSKDTKRTLLGNSLDVQK 94

Query: 221 ILSGNSH 241
             SG  H
Sbjct: 95  DASGVKH 101


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 140 KAVIRVVGSSNRSRKSNMEGNATSDIVILSGNSHPELAD 256
           K  +R +   NR+RKS +E NA    +    N   EL D
Sbjct: 131 KKYLREISQCNRTRKSFVELNALQTSIDTIRNELNELRD 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,404
Number of Sequences: 5004
Number of extensions: 39900
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)