Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J10
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070...    71   6e-13
04_04_0219 - 23703579-23703747,23703836-23703944,23704170-237042...    30   0.85 
07_03_0025 + 12587868-12588429,12591820-12592031,12592212-125926...    28   4.5  
05_05_0164 - 22847641-22847834,22848033-22848288,22848634-22849266     27   6.0  
04_01_0105 + 1098551-1100392                                           27   7.9  
02_05_0263 - 27257150-27259213                                         27   7.9  

>06_03_0763 -
           24405525-24405701,24406209-24406368,24406924-24407005,
           24407098-24407167,24407443-24407607,24407731-24407874,
           24408467-24408715,24409006-24409221,24409306-24409398
          Length = 451

 Score = 70.5 bits (165), Expect = 6e-13
 Identities = 37/90 (41%), Positives = 54/90 (60%)
 Frame = +2

Query: 209 SDIVILSGNSHPELADLIAKRLGVRKGGCSVYHKTNRETMVEIADSIRGKNIYIVQTGTK 388
           S + I SG ++  LA  IA  LGV  G   +    + E  V++ +S+RG ++++VQ    
Sbjct: 88  SRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCS 147

Query: 389 DVNNNIMELLIMAYACKTSSARSIVGVIPY 478
            VN N+MEL +M  AC+ +SARSI  VIPY
Sbjct: 148 PVNENLMELFVMIDACRRASARSITVVIPY 177


>04_04_0219 -
           23703579-23703747,23703836-23703944,23704170-23704272,
           23704365-23704396,23704855-23705072,23706295-23706618,
           23706982-23707069,23707179-23707263
          Length = 375

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 299 VYHKTNRETMVEIADSIRGKNIYIVQTGTKDVNNNIMEL 415
           +Y +  RE ++ I ++     IYI + G  ++NN  M L
Sbjct: 257 IYPEGLRELLLHIKENYGNPTIYITENGVDEINNKTMRL 295


>07_03_0025 +
           12587868-12588429,12591820-12592031,12592212-12592603,
           12592608-12592965
          Length = 507

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -2

Query: 312 VLW*TEHPPLRTPSRLAIKSANSGCELP 229
           VL  T HPPL  P R    SA   CELP
Sbjct: 361 VLTSTPHPPLLHPLRRRSDSAFRECELP 388


>05_05_0164 - 22847641-22847834,22848033-22848288,22848634-22849266
          Length = 360

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 338 ADSIRGKNIYIVQTGTKDV 394
           +D I GK++Y++  GT DV
Sbjct: 161 SDEIAGKSLYVISAGTNDV 179


>04_01_0105 + 1098551-1100392
          Length = 613

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = +2

Query: 248 LADLIAKRLGVRKGGCSVYHKTNRETMVEIADSIRGKNIYIVQTGTKDVNNNIMELLIMA 427
           L D++A  LGVR  G +        + +E+ D  R  + Y+++      N+ +   L+  
Sbjct: 18  LYDMVA--LGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDM 75

Query: 428 YAC--KTSSARSIVGVIP 475
           YA   +   AR +  ++P
Sbjct: 76  YATHEQVGKARQVFDMVP 93


>02_05_0263 - 27257150-27259213
          Length = 687

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = -1

Query: 289 TFAYTKSLSNQIC*FGVRITT*YNNVRRCIPLHIALTRSITGTYDSDDSLVFTIAVF 119
           TFA   S   ++C FG   +     +RR IPL + L  ++   Y     +  +  +F
Sbjct: 236 TFANVISACVEVCYFGYAASIHTYLIRRYIPLDVVLATALVKVYSKCKKITISRHLF 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,037,746
Number of Sequences: 37544
Number of extensions: 226968
Number of successful extensions: 497
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)