Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J10
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68014-5|CAA92027.1|  353|Caenorhabditis elegans Hypothetical pr...   123   8e-29
U00036-6|AAK29853.1|  377|Caenorhabditis elegans Hypothetical pr...    87   8e-18
U00036-5|AAT92064.1|  446|Caenorhabditis elegans Hypothetical pr...    87   8e-18
U00036-7|AAK29858.2|  319|Caenorhabditis elegans Hypothetical pr...    85   2e-17
U00036-8|AAL06052.1|  318|Caenorhabditis elegans Hypothetical pr...    84   4e-17
U61945-6|AAB03129.2|  199|Caenorhabditis elegans Hypothetical pr...    32   0.19 
Z50794-8|CAA90655.2|  450|Caenorhabditis elegans Hypothetical pr...    30   1.00 
Z49937-9|CAO78727.1|  450|Caenorhabditis elegans Hypothetical pr...    30   1.00 
Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    27   7.0  

>Z68014-5|CAA92027.1|  353|Caenorhabditis elegans Hypothetical
           protein W04G3.5 protein.
          Length = 353

 Score =  123 bits (296), Expect = 8e-29
 Identities = 51/94 (54%), Positives = 81/94 (86%)
 Frame = +2

Query: 200 NATSDIVILSGNSHPELADLIAKRLGVRKGGCSVYHKTNRETMVEIADSIRGKNIYIVQT 379
           +A+S +V+L+GNSHPELA ++++RL +R G  +VY+KTNRET V+I  S+RGK+++I+Q+
Sbjct: 6   DASSGMVLLTGNSHPELAKMVSERLEIRLGEATVYNKTNRETSVDIKQSVRGKHVFILQS 65

Query: 380 GTKDVNNNIMELLIMAYACKTSSARSIVGVIPYL 481
           G+K+VNN++MELL++ YACKTS +++I  ++PYL
Sbjct: 66  GSKNVNNDVMELLVLIYACKTSMSKTITVIMPYL 99


>U00036-6|AAK29853.1|  377|Caenorhabditis elegans Hypothetical
           protein R151.2a protein.
          Length = 377

 Score = 86.6 bits (205), Expect = 8e-18
 Identities = 40/100 (40%), Positives = 67/100 (67%)
 Frame = +2

Query: 176 SRKSNMEGNATSDIVILSGNSHPELADLIAKRLGVRKGGCSVYHKTNRETMVEIADSIRG 355
           ++ S+ E     +I + SG+SHP+L+  I +RL +     S+   +N+ET VEI +S+RG
Sbjct: 49  AQSSSEEDLRMPNIKVFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRG 108

Query: 356 KNIYIVQTGTKDVNNNIMELLIMAYACKTSSARSIVGVIP 475
           +++YI+Q+   ++N+N+MELLIM  ACK +S+  +  VIP
Sbjct: 109 EDVYIIQSAAGEINDNLMELLIMINACKIASSCRVAAVIP 148


>U00036-5|AAT92064.1|  446|Caenorhabditis elegans Hypothetical
           protein R151.2d protein.
          Length = 446

 Score = 86.6 bits (205), Expect = 8e-18
 Identities = 40/100 (40%), Positives = 67/100 (67%)
 Frame = +2

Query: 176 SRKSNMEGNATSDIVILSGNSHPELADLIAKRLGVRKGGCSVYHKTNRETMVEIADSIRG 355
           ++ S+ E     +I + SG+SHP+L+  I +RL +     S+   +N+ET VEI +S+RG
Sbjct: 118 AQSSSEEDLRMPNIKVFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRG 177

Query: 356 KNIYIVQTGTKDVNNNIMELLIMAYACKTSSARSIVGVIP 475
           +++YI+Q+   ++N+N+MELLIM  ACK +S+  +  VIP
Sbjct: 178 EDVYIIQSAAGEINDNLMELLIMINACKIASSCRVAAVIP 217


>U00036-7|AAK29858.2|  319|Caenorhabditis elegans Hypothetical
           protein R151.2b protein.
          Length = 319

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 38/88 (43%), Positives = 62/88 (70%)
 Frame = +2

Query: 212 DIVILSGNSHPELADLIAKRLGVRKGGCSVYHKTNRETMVEIADSIRGKNIYIVQTGTKD 391
           +I + SG+SHP+L+  I +RL +     S+   +N+ET VEI +S+RG+++YI+Q+   +
Sbjct: 3   NIKVFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAAGE 62

Query: 392 VNNNIMELLIMAYACKTSSARSIVGVIP 475
           +N+N+MELLIM  ACK +S+  +  VIP
Sbjct: 63  INDNLMELLIMINACKIASSCRVAAVIP 90


>U00036-8|AAL06052.1|  318|Caenorhabditis elegans Hypothetical
           protein R151.2c protein.
          Length = 318

 Score = 84.2 bits (199), Expect = 4e-17
 Identities = 37/85 (43%), Positives = 60/85 (70%)
 Frame = +2

Query: 221 ILSGNSHPELADLIAKRLGVRKGGCSVYHKTNRETMVEIADSIRGKNIYIVQTGTKDVNN 400
           + SG+SHP+L+  I +RL +     S+   +N+ET VEI +S+RG+++YI+Q+   ++N+
Sbjct: 5   VFSGSSHPDLSTRICERLQLEVSKASLKKFSNKETNVEIGESVRGEDVYIIQSAAGEIND 64

Query: 401 NIMELLIMAYACKTSSARSIVGVIP 475
           N+MELLIM  ACK +S+  +  VIP
Sbjct: 65  NLMELLIMINACKIASSCRVAAVIP 89


>U61945-6|AAB03129.2|  199|Caenorhabditis elegans Hypothetical
           protein C49C8.6 protein.
          Length = 199

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 24/100 (24%), Positives = 44/100 (44%)
 Frame = +2

Query: 116 NKYGNCKHKAVIRVVGSSNRSRKSNMEGNATSDIVILSGNSHPELADLIAKRLGVRKGGC 295
           N Y NC+   V+     +NR+ K + + N  +  +     +H ++ + I + +     GC
Sbjct: 71  NPYLNCETVQVVGKQNENNRTGKIDSDSNHNATAIFKCNKNHWKIGEQIIEEI-----GC 125

Query: 296 SVYHKTNRETMVEIADSIRGKNIYIVQTGTKDVNNNIMEL 415
           + +H T      +I +S   KN  I      ++  NI EL
Sbjct: 126 N-FHCTENVKSRKIEESQLSKNTKIDFRTQPNITLNIREL 164


>Z50794-8|CAA90655.2|  450|Caenorhabditis elegans Hypothetical
           protein F59F5.1 protein.
          Length = 450

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 344 SIRGKNIYIVQTGTKDVNNNIMELLIMAYACKTSSARSIVGVIP 475
           +I G  I   +TG + V N  +E +I  Y C    A + V V+P
Sbjct: 40  AICGFYILFAETGVRQVMNGFVEPVIKTYNCTKDQADTAVLVVP 83


>Z49937-9|CAO78727.1|  450|Caenorhabditis elegans Hypothetical
           protein F59F5.1 protein.
          Length = 450

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 344 SIRGKNIYIVQTGTKDVNNNIMELLIMAYACKTSSARSIVGVIP 475
           +I G  I   +TG + V N  +E +I  Y C    A + V V+P
Sbjct: 40  AICGFYILFAETGVRQVMNGFVEPVIKTYNCTKDQADTAVLVVP 83


>Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical
           protein W05B5.2 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 167 SNRSRKSNMEGNATSDIVILSGNSHPELADLIAKRL 274
           +N +  S+ E   TS+I+ L  N+H E  D+IA+ L
Sbjct: 5   NNVTSGSSEEDYDTSEIIGLQVNTHEEYEDIIAEAL 40


>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -2

Query: 396 FTSLVPVCTMYIFFPRIESAISTIVSLLVLW*TEHPPLRTPSRLAIKSANSGCELPLSIT 217
           F S++ V T+++    I   I  I  +L  W      L  P R+A+    +GC + ++  
Sbjct: 278 FQSII-VSTLFLV---IAIGIDDIFIILAAWHRTDKHLEIPERMALTVQEAGCSMTVTTV 333

Query: 216 MSDVAF 199
            + V+F
Sbjct: 334 TNLVSF 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,941,532
Number of Sequences: 27780
Number of extensions: 224921
Number of successful extensions: 585
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)