Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J09
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    27   1.0  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   4.2  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   4.2  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    25   4.2  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    25   5.5  
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc...    24   7.3  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    24   7.3  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    24   9.7  

>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +2

Query: 161 ATKNANNLHDPEIAQYLEEKFIEDHATTIRELAGFTNDLKGVIISNDKDLSLALYIFDE 337
           A  N+  L+D    Q L +KF  DH+  ++ +    + L   I+S   D S+ LY   E
Sbjct: 147 AMDNSLRLYDAHTGQLLTQKF--DHSHYVQGVC--WDPLNQYIVSESSDRSICLYEIQE 201


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 117 VSSALARESNSWSSTTYFLPGS-GS*MLRLEKS-MLIPPS 4
           ++S L   S  WS++T FLP S    M+ L  S  L PPS
Sbjct: 128 LTSVLFVNSGMWSASTSFLPSSFAMNMVTLALSAQLSPPS 167


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 53  EPGKKYVVELHELDSLAKALDTQKELA 133
           +P ++ V  L E+D+L K LDT   LA
Sbjct: 213 KPTRQTVYRLSEVDNLVKKLDTVIRLA 239


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 77  ELHELDSLAKALDTQKELAERAFTIHREATKNANNLHDPEIAQ 205
           E H L++LAK ++  + +  +     REA +  +NL D  + +
Sbjct: 380 ERHALETLAKNIENNRFILGKRRRKAREALQKLDNLKDLSVQE 422


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 182 LHDPEIAQYLEEKFIEDHATTIR 250
           LHDP +  YL   F  D A  +R
Sbjct: 560 LHDPNLVPYLHGLFPVDEARNVR 582


>SPAC23H4.11c |cnl2||centromere localized protein
           Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 119 QKELAERAFTIHREATKNANNLHDPEIAQYLEEKFIEDHATTIRELAGF 265
           QK LA+    IH E+     +  D  +A  +E+     HA+T+ ++  F
Sbjct: 53  QKRLAKLRANIHLESQVIGKSRIDRMLATNVEKLQTVSHASTLHDVEEF 101


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 392 ILLYIYMYMFLFRRPSGGTRRKCTEREISP 303
           + L  Y+++FL   PS G +++   R+ISP
Sbjct: 227 VQLMYYVHLFLNYFPSLGEKQQSIFRDISP 256


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 11  GINMDFSRRSIYDPEPGKKYVVELHELDSLAKALDTQKELAERA 142
           G  +DF   ++ + EPG   +  +  L ++A AL+   E+ +RA
Sbjct: 100 GHAVDFIIDTLRNNEPGTITICTIGPLTNIALALNKAPEVIQRA 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,367
Number of Sequences: 5004
Number of extensions: 26369
Number of successful extensions: 68
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)