Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J09
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 32 0.19
01_01_0424 + 3200223-3200634,3200677-3200836,3200987-3201342,320... 30 0.58
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 29 1.0
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619... 28 3.1
02_02_0672 - 12814610-12815703,12815743-12816226 27 4.1
01_01_0421 + 3181139-3184207 27 4.1
05_07_0182 + 28243881-28245406,28245460-28245505,28246309-282464... 27 5.4
08_02_0287 + 15347145-15349604 27 7.1
04_01_0301 + 4016588-4016627,4016715-4018837 27 7.1
02_05_0933 + 32846658-32846729,32847038-32847133,32847243-328474... 27 7.1
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572... 26 9.4
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 31.9 bits (69), Expect = 0.19
Identities = 15/66 (22%), Positives = 37/66 (56%)
Frame = +2
Query: 89 LDSLAKALDTQKELAERAFTIHREATKNANNLHDPEIAQYLEEKFIEDHATTIRELAGFT 268
L ++ AL +K + E+ +H A++ +DP++ ++E +F+E+ I++++ +
Sbjct: 176 LYAMELALALEKLVNEKLHNLHSVASR----CNDPQLTDFVESEFLEEQVEAIKKISEYV 231
Query: 269 NDLKGV 286
L+ V
Sbjct: 232 AQLRRV 237
>01_01_0424 +
3200223-3200634,3200677-3200836,3200987-3201342,
3201958-3203252
Length = 740
Score = 30.3 bits (65), Expect = 0.58
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -2
Query: 261 PANSRIVVA*SSMNFSSRYCAISGSCRLLAFFVASR*MVKARSANSFC 118
P NSR V+ S+ FSS IS A+F ASR + +SFC
Sbjct: 326 PQNSRFVLDYSNNRFSSIPTNISTQLGYTAYFKASRNNLSGEIPSSFC 373
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 29.5 bits (63), Expect = 1.0
Identities = 9/38 (23%), Positives = 24/38 (63%)
Frame = +2
Query: 173 ANNLHDPEIAQYLEEKFIEDHATTIRELAGFTNDLKGV 286
A+ +DP++ ++E +F+E+ I++++ + L+ V
Sbjct: 226 ASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRV 263
>01_03_0014 +
11655216-11655287,11657833-11658048,11659848-11661912,
11662966-11663013,11663081-11663328,11663429-11663558,
11663707-11663983,11664102-11664180,11664311-11664397,
11664586-11664618
Length = 1084
Score = 27.9 bits (59), Expect = 3.1
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 8 GGINMDFSRRSIYDPEPGK-KYVVELHELDSLAKALDTQKELAERAFTIHREATKNANNL 184
G ++ F I P+ + V L E+ + KA+D LA+ +FT E K NL
Sbjct: 318 GYVDPAFCENGILTPKSDVYSFGVVLLEIITRKKAVDGTITLAQ-SFTDAIEKGKKVMNL 376
Query: 185 HDPEIAQYLEEKFIED 232
D EI F+ED
Sbjct: 377 FDEEINDKQNMNFLED 392
>02_02_0672 - 12814610-12815703,12815743-12816226
Length = 525
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -1
Query: 301 IVAYNNTFEVVCETG*FADCRGVIFDELLLKVLCDLRIVQIIGVLRSLTVNGEGAFCQLL 122
+VAYN +CE G + ++ D + + + R I+ +RSL V G+ + + L
Sbjct: 323 VVAYNTVMSSLCEMGKWRGIMKLLTDMIKKGIEPNTRTFNIL--IRSLCVGGKSSLAKSL 380
Query: 121 L 119
+
Sbjct: 381 I 381
>01_01_0421 + 3181139-3184207
Length = 1022
Score = 27.5 bits (58), Expect = 4.1
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -2
Query: 261 PANSRIVVA*SSMNFSSRYCAISGSCRLLAFFVASR*MVKARSANSFC 118
P NS V+ S+ FSS IS R A+F ASR + SFC
Sbjct: 608 PQNSGTVLDYSNNRFSSIPPNISTQLRDTAYFKASRNNISGDIPTSFC 655
>05_07_0182 +
28243881-28245406,28245460-28245505,28246309-28246400,
28246513-28246635,28246753-28246984
Length = 672
Score = 27.1 bits (57), Expect = 5.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 158 EATKNANNLHDPEIAQYLEEKFIEDHATTIRELAGFTNDLKGVII 292
E K+A + ++ LE++ + DH T RE F+ L+G++I
Sbjct: 303 EKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSLRGMLI 347
>08_02_0287 + 15347145-15349604
Length = 819
Score = 26.6 bits (56), Expect = 7.1
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +2
Query: 11 GINMDFSRRSIYDPEPGKKYVVELHELDSLAKALDTQKELAER-----AFTIHREATKNA 175
G+N S +S YD EPG ++ + L + L KE ER A + R
Sbjct: 644 GLNHFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSAC 703
Query: 176 NNLHDPEIAQYLEE 217
+ + EI +Y E
Sbjct: 704 HLFGNAEIGRYAAE 717
>04_01_0301 + 4016588-4016627,4016715-4018837
Length = 720
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 65 KYVVELHELDSLAKALDTQKELAERAFTIHR-EATKNANNL 184
++ VE+ L + KAL+ +KE+ +AF + + E K +L
Sbjct: 523 QFEVEIKSLKNELKALEEEKEVTAKAFNVEKAEILKELEDL 563
>02_05_0933 +
32846658-32846729,32847038-32847133,32847243-32847411,
32847608-32847669,32848364-32849320,32850036-32850119,
32850307-32850595,32850645-32850694
Length = 592
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 32 RRSIYDPEPGKKYVVELHELDSLAKALDTQKE 127
+R +YD + + LHE+DSL+ A T+++
Sbjct: 393 KRHVYDEVLLRPRIAPLHEVDSLSTAYPTRED 424
>05_05_0334 + 24156532-24156565,24156681-24156782,24157145-24157274,
24157361-24157445,24157525-24157666,24157762-24157894,
24157993-24158254,24158331-24158519,24158596-24158721,
24158809-24159195,24159288-24159398,24159629-24160423,
24161114-24161255,24161350-24162518,24162609-24162818,
24163010-24163478,24164037-24164464
Length = 1637
Score = 26.2 bits (55), Expect = 9.4
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 35 RSIYDPEPGKKYVVELHELDSLAKALDTQKELAERAFTIHREATKNANNLHDPEIAQYLE 214
R +DP ++ + +E D L K QKELA++ F + NL E Q+L
Sbjct: 1217 RGNHDPYNHEQDMTSQNEQDKLRK----QKELAKKHFKPRMIVHPHFQNLTAEEAMQFLS 1272
Query: 215 EK 220
+K
Sbjct: 1273 DK 1274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,963,766
Number of Sequences: 37544
Number of extensions: 192253
Number of successful extensions: 505
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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