Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J09
(394 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 30 0.51
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 30 0.68
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 30 0.68
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 2.7
CU457744-3|CAM36369.1| 247|Caenorhabditis elegans Hypothetical ... 27 3.6
AF002197-4|AAD34659.1| 393|Caenorhabditis elegans Hypothetical ... 27 3.6
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 27 6.3
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 27 6.3
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 27 6.3
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 26 8.4
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 26 8.4
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 26 8.4
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 26 8.4
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
assigned gene nameprotein 278 protein.
Length = 1130
Score = 30.3 bits (65), Expect = 0.51
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Frame = +2
Query: 62 KKYVVELHELDSLAKALDTQKELAERAFTIHREATKNANNLHDPEI--AQYLEEKFIE-- 229
+KY++E+ L+ K+L T+KE F + + A +L++ E+ A+ L K +E
Sbjct: 238 QKYIIEIQRLEEERKSLRTEKERLGETFEM---KLRRAQSLYETELTAAKMLYTKELEAL 294
Query: 230 -DHATTIRE 253
DH ++E
Sbjct: 295 RDHEEALKE 303
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.6 protein.
Length = 316
Score = 29.9 bits (64), Expect = 0.68
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 221 FIEDHATTIRELAGFTNDLKGVIISNDKDLSLALYIFDEYLQK 349
F+ED + E GF ND +I+ D + +A +F QK
Sbjct: 35 FVEDSHRELGEFKGFANDAWNSMINQDDSVRMARSVFGRRRQK 77
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical
protein C15A11.5 protein.
Length = 316
Score = 29.9 bits (64), Expect = 0.68
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 221 FIEDHATTIRELAGFTNDLKGVIISNDKDLSLALYIFDEYLQK 349
F+ED + E GF ND +I+ D + +A +F QK
Sbjct: 35 FVEDSHRELGEFKGFANDAWNSMINQDDSVRMARSVFGRRRQK 77
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 2.7
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 23 DFSRRSIYDPEPGKKYVVELHELDSLAKALDTQKELAERAFTIHREATKNANNLHDPEI 199
DF +S D E KKY+VE+ D + +A ++ +A I +A + A+ P I
Sbjct: 479 DFYAKSRGDVEAAKKYLVEMKGFDKMIQAAQAGLPVSIKATPIPPQA-QTASTTLQPRI 536
>CU457744-3|CAM36369.1| 247|Caenorhabditis elegans Hypothetical
protein T06A10.4 protein.
Length = 247
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 26 FSRRSIYDPEPGKKYVVELHELDSLA-KALDTQKELAERAFTIHREAT 166
FS+ + PE KK +VE+ LD LA K ++ K+ F + E T
Sbjct: 14 FSKINREVPEKAKKAIVEIERLDILAKKEMEVAKKHKIEFFANYEEMT 61
>AF002197-4|AAD34659.1| 393|Caenorhabditis elegans Hypothetical
protein F20H11.6 protein.
Length = 393
Score = 27.5 bits (58), Expect = 3.6
Identities = 10/34 (29%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 146 TIHREATKN-ANNLHDPEIAQYLEEKFIEDHATT 244
+IH +A ++ +NN H P ++Q+ +E + H+++
Sbjct: 30 SIHDDAGQSFSNNTHTPSVSQFFDETSNDSHSSS 63
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 26.6 bits (56), Expect = 6.3
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +1
Query: 223 HRRSRHDNPRISRFHKRPQRCYYKQR*GLISRSVHFRRVPPEGR 354
HR S PR R P+ CY Q+ G SR R P EGR
Sbjct: 168 HRSSDCPEPRKER---EPRVCYNCQQPGHTSRECTEERKPREGR 208
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 26.6 bits (56), Expect = 6.3
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +1
Query: 223 HRRSRHDNPRISRFHKRPQRCYYKQR*GLISRSVHFRRVPPEGR 354
HR S PR R P+ CY Q+ G SR R P EGR
Sbjct: 168 HRSSDCPEPRKER---EPRVCYNCQQPGHTSRECTEERKPREGR 208
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 26.6 bits (56), Expect = 6.3
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +1
Query: 223 HRRSRHDNPRISRFHKRPQRCYYKQR*GLISRSVHFRRVPPEGR 354
HR S PR R P+ CY Q+ G SR R P EGR
Sbjct: 168 HRSSDCPEPRKER---EPRVCYNCQQPGHTSRECTEERKPREGR 208
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical protein
F40E10.4 protein.
Length = 1410
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 83 GVPQRISYRVPDRKCYV 33
G+P RIS R +RKC++
Sbjct: 1188 GLPHRISIRTSERKCFL 1204
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/71 (19%), Positives = 32/71 (45%)
Frame = +2
Query: 35 RSIYDPEPGKKYVVELHELDSLAKALDTQKELAERAFTIHREATKNANNLHDPEIAQYLE 214
R ++PE +++VVE E + + ++K + + T + H+ EI +E
Sbjct: 5655 REHFEPEDDQEHVVESQEYSASGSPVPSEKSVEKVIETTTTTTVTREHFEHEDEIPTIVE 5714
Query: 215 EKFIEDHATTI 247
+ A+++
Sbjct: 5715 SSHDDQAASSV 5725
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/71 (19%), Positives = 32/71 (45%)
Frame = +2
Query: 35 RSIYDPEPGKKYVVELHELDSLAKALDTQKELAERAFTIHREATKNANNLHDPEIAQYLE 214
R ++PE +++VVE E + + ++K + + T + H+ EI +E
Sbjct: 5655 REHFEPEDDQEHVVESQEYSASGSPVPSEKSVEKVIETTTTTTVTREHFEHEDEIPTIVE 5714
Query: 215 EKFIEDHATTI 247
+ A+++
Sbjct: 5715 SSHDDQAASSV 5725
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 26.2 bits (55), Expect = 8.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 83 GVPQRISYRVPDRKCYV 33
G+P RIS R +RKC++
Sbjct: 1188 GLPHRISIRTSERKCFL 1204
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,201,080
Number of Sequences: 27780
Number of extensions: 154048
Number of successful extensions: 475
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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