Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J09
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   8.8  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 176 NNLHDPE 196
           NNLHDPE
Sbjct: 171 NNLHDPE 177


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 176 NNLHDPE 196
           NNLHDPE
Sbjct: 171 NNLHDPE 177


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 176 NNLHDPE 196
           NNLHDPE
Sbjct: 171 NNLHDPE 177


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 212 EEKFIEDHATTIRELAGFTN 271
           EEK I DH  T  +    TN
Sbjct: 815 EEKNINDHCVTTEQSVVVTN 834


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 215 EKFIEDHATTIRELAGFTNDLKGVIISNDKDLSLALYIFDEY 340
           EK     +T +  L  F+N L  +++ +   ++L LY+ D +
Sbjct: 548 EKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRF 589


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,966
Number of Sequences: 438
Number of extensions: 2062
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)