Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J07
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 64 2e-11
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 42 5e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 39 7e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.002
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.004
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 35 0.011
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.011
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 34 0.019
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 30 0.30
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 0.40
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 0.53
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 0.93
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.1
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 25 6.5
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1... 25 8.7
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/64 (42%), Positives = 45/64 (70%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F+++G ++N+ LNLDRRTG++KGYAL+EY T +QA A + +L + + VD+ F++
Sbjct: 30 FADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDE-KNLSLLDEKLEVDFAFLE 88
Query: 426 GPTK 415
P +
Sbjct: 89 PPER 92
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 42.3 bits (95), Expect = 5e-05
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDG 475
F +GGIQ + L D+ TG KG+A V Y A AR+ LDG
Sbjct: 222 FRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 38.7 bits (86), Expect = 7e-04
Identities = 19/56 (33%), Positives = 34/56 (60%)
Frame = -1
Query: 609 QFSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVD 442
+F EYG I ++ +D ++G KGY V++ET + A +A A +I G+ +++D
Sbjct: 282 EFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLD 337
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
FS++G ++ I++ + G + G+A V + K A A +L+G +I G+ I+VDW K
Sbjct: 128 FSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 439
FS+ G I++ + + TG +GY V + + A A + L + G+ + +D+
Sbjct: 25 FSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDF 80
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVD 442
FSE+G +I L D+ TG KG+A ++YE + A + + +L + + VD
Sbjct: 51 FSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVD 105
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/54 (31%), Positives = 33/54 (61%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 445
F YG I +I + + +++ KGY +EY + QAA+A + ++ A++ G+ + V
Sbjct: 119 FGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFV 172
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 34.7 bits (76), Expect = 0.011
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = -1
Query: 609 QFSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVD 442
+F+ YG I+ I++ ++ TG GYA V +E + A +A G + G+ I VD
Sbjct: 119 EFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVD 174
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 34.7 bits (76), Expect = 0.011
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 439
F + G +++ QL +D +G KGY EY AASA L+ D + + VD+
Sbjct: 25 FKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVDF 80
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 33.9 bits (74), Expect = 0.019
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAI 451
FS++G + ++++ +R+TG K YA +E+E+ A E + + G+ +
Sbjct: 125 FSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETMHNYLLYGKLL 176
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 29.9 bits (64), Expect = 0.30
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F++ G + ++ + TG KG+ +V++E AAS+ E L+G G+ + + +
Sbjct: 300 FTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYAHYA 358
Query: 426 GP 421
P
Sbjct: 359 TP 360
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 29.5 bits (63), Expect = 0.40
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 445
F +G I+ + L D + KG+ ++Y A +A E ++G D+ G+ + V
Sbjct: 360 FEPFGDIEFVHLQRDDQNRS-KGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.1 bits (62), Expect = 0.53
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = -1
Query: 597 YGGIQNIQL--NLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 439
YG ++++++ DR +G+A E+ T ++AA+A AL +LG+ + + +
Sbjct: 744 YGQLRSVRVPKKFDRSA---RGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQY 795
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.3 bits (60), Expect = 0.93
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = -1
Query: 597 YGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFV 430
+G + + QL + G KG+ E++ A A LDG D G + + V
Sbjct: 333 FGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFACV 388
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEY 520
F G + ++++ D+ +G KGYA VE+
Sbjct: 112 FKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 265 FNKNIPQ*KSICSIIHSYILD 327
F NIP KS C II+ +I D
Sbjct: 314 FYDNIPDCKSWCGIIYQFITD 334
>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 115
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 251 IEYCFLIKIFHNRNRFVRSFTRTYSIRKRHIYYKDIFFLQFH 376
+E L+ + + + F S +S ++HIY+ D F+ F+
Sbjct: 1 MEDSLLLSVNISDSLFTFSLKPLFSQYRKHIYFNDCFYSTFN 42
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,121
Number of Sequences: 5004
Number of extensions: 49766
Number of successful extensions: 107
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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