Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J07
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 96 2e-20
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 42 3e-04
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 41 6e-04
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 41 6e-04
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 40 0.001
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 40 0.001
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 40 0.001
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 38 0.007
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 37 0.013
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 36 0.030
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 36 0.030
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 36 0.030
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 36 0.030
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 36 0.030
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 36 0.030
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 36 0.030
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 36 0.030
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 35 0.040
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 35 0.040
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 35 0.052
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 34 0.069
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 33 0.12
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.12
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 33 0.16
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 33 0.16
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 33 0.16
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 31 0.64
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 31 0.64
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 31 0.64
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 31 0.64
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 31 0.64
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 31 0.64
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 31 0.64
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 31 0.85
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 30 1.1
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 30 1.1
Z92806-4|CAB07259.1| 727|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 30 1.5
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 30 1.5
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 30 1.5
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 30 1.5
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical pr... 29 2.6
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 29 2.6
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 29 2.6
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 29 3.4
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 29 3.4
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 28 4.5
AL117203-10|CAB60424.2| 855|Caenorhabditis elegans Hypothetical... 28 4.5
AL032657-7|CAA21740.1| 340|Caenorhabditis elegans Hypothetical ... 27 7.9
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/70 (65%), Positives = 53/70 (75%)
Frame = -1
Query: 609 QFSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFV 430
+FSEYG I+NI LNLDRRTGFLKGYALVEYET K+A A + + D+LGQ + VDWCFV
Sbjct: 74 KFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTDLLGQNVKVDWCFV 133
Query: 429 KGPTKPHNKR 400
KG K KR
Sbjct: 134 KG-KKTSGKR 142
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 445
F +YG + +Q+ +D++TG KG+A+VE+ + A +A ALDG G+ + +
Sbjct: 299 FKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMMHI 352
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVD 442
FS+ G + N+++ DR TG +G+A VE+ A A + +G D G+A+ V+
Sbjct: 24 FSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVN 78
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVD 442
FS G I N+++ DR TG +G+A +E+ A A E ++GA+ G+ + V+
Sbjct: 25 FSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVN 79
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFL-KGYALVEYETYKQAASAREALDGADILGQAISVD 442
FS YG I+N+ L DR + +GY VEY+ + A + + +DG I G A+ V+
Sbjct: 153 FSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVE 208
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F +G I++I ++ D TG K +A VEYE + A A+E+++G + G+ + V+ +
Sbjct: 122 FDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQ 181
Query: 426 GPTKPHN 406
P N
Sbjct: 182 EMRLPQN 188
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F +G I++I ++ D TG K +A VEYE + A A+E+++G + G+ + V+ +
Sbjct: 122 FDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQ 181
Query: 426 GPTKPHN 406
P N
Sbjct: 182 EMRLPQN 188
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F +G I++I ++ D TG K +A VEYE + A A+E+++G + G+ + V+ +
Sbjct: 122 FDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQ 181
Query: 426 GPTKPHN 406
P N
Sbjct: 182 EMRLPQN 188
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVD 442
FS+YG + NI L D+ TG KG+A + Y+ + A + +G + + I VD
Sbjct: 58 FSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVD 112
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 439
F+ G + N+++ DR TG +G+A VE+ A A E L+G G+ + V++
Sbjct: 26 FAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNY 81
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -1
Query: 558 RTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 439
RT ++GYA V++ET + AA A ++ ADI GQ + W
Sbjct: 285 RTFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVRCSW 324
Score = 32.3 bits (70), Expect = 0.28
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F++ G + ++ + G YA VE+ + QA A ++ +G ++L + + V W F
Sbjct: 60 FNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQATLALQSHNGRELLEKEMHVTWAF-- 114
Query: 426 GPTKPHNKR 400
P +P R
Sbjct: 115 EPREPGENR 123
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 439
F ++G + ++ D T KGY V Y + A A + ++GA + + I +W
Sbjct: 152 FVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNW 207
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 35.5 bits (78), Expect = 0.030
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F+ +GGI + ++ +D+ T K + V YE + A +A A++G I + + V +
Sbjct: 355 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 414
Query: 426 GPTKPHNK 403
G P+N+
Sbjct: 415 G--NPYNR 420
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 35.5 bits (78), Expect = 0.030
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F+ +GGI + ++ +D+ T K + V YE + A +A A++G I + + V +
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 578
Query: 426 GPTKPHNK 403
G P+N+
Sbjct: 579 G--NPYNR 584
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 35.5 bits (78), Expect = 0.030
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F+ +GGI + ++ +D+ T K + V YE + A +A A++G I + + V +
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 578
Query: 426 GPTKPHNK 403
G P+N+
Sbjct: 579 G--NPYNR 584
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 35.5 bits (78), Expect = 0.030
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 445
FS +G I + ++ +D GF KGY V +ET + A +A + ++G + G+ + V
Sbjct: 140 FSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 35.5 bits (78), Expect = 0.030
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F+ +GGI + ++ +D+ T K + V YE + A +A A++G I + + V +
Sbjct: 448 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 507
Query: 426 GPTKPHNK 403
G P+N+
Sbjct: 508 G--NPYNR 513
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 35.5 bits (78), Expect = 0.030
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F+ +GGI + ++ +D+ T K + V YE + A +A A++G I + + V +
Sbjct: 519 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 578
Query: 426 GPTKPHNK 403
G P+N+
Sbjct: 579 G--NPYNR 584
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 35.5 bits (78), Expect = 0.030
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 445
FS +G I + ++ +D GF KGY V +ET + A +A + ++G + G+ + V
Sbjct: 77 FSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 129
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 35.5 bits (78), Expect = 0.030
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 445
FS +G I + ++ +D GF KGY V +ET + A +A + ++G + G+ + V
Sbjct: 140 FSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 35.1 bits (77), Expect = 0.040
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = -1
Query: 603 SEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQ 457
S+YG I + + +D+ T KGY V++E+ + AA+A + L+ + Q
Sbjct: 128 SKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQ 176
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 35.1 bits (77), Expect = 0.040
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = -1
Query: 603 SEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQ 457
S+YG I + + +D+ T KGY V++E+ + AA+A + L+ + Q
Sbjct: 102 SKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQAQ 150
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 34.7 bits (76), Expect = 0.052
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F +YG I+ + + R F A VE+E ++ A A A DG + G+ I V++
Sbjct: 29 FHKYGRIKYVDIKSGRGPAF----AFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGV 84
Query: 426 GPTKPHNK 403
GP P +
Sbjct: 85 GPRGPSGR 92
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 34.3 bits (75), Expect = 0.069
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F +YG I+ + + R F A VE+E ++ A A A DG + G+ I V++
Sbjct: 29 FHKYGRIKYVDIKSGRGPAF----AFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGV 84
Query: 426 GPTKP 412
GP P
Sbjct: 85 GPRGP 89
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -1
Query: 582 NIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVD 442
+I L DR +G KG+A V +E +Q +A L+GAD + + V+
Sbjct: 40 DIHLVHDRDSGSFKGFAYVTFENEQQMNTAISGLNGADFGNRVLKVN 86
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 439
F + G + I + D+ TG KG+A V +E+ AA A L+ + + V+W
Sbjct: 196 FGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKVEW 251
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -1
Query: 609 QFSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 439
+F YG I+ + + D G +GYA +EY + +A + DG + G+ + VD+
Sbjct: 123 EFEAYGKIKKLTMVHDE-AGKPRGYAFIEYSDKAEMHTAYKKADGIKVDGKRLVVDY 178
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDG 475
F ++G + I++ +RRTG KG+A V ++ A A E+++G
Sbjct: 52 FRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESMNG 95
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYET---YKQAASARE 487
F++YG + Q+ DR G +G+A VE+ T K A +ARE
Sbjct: 49 FTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAARE 91
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYET---YKQAASARE 487
F++YG + Q+ DR G +G+A VE+ T K A +ARE
Sbjct: 49 FTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAARE 91
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 31.1 bits (67), Expect = 0.64
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F+++G + ++ D +T KGY V + + A +A ++G I +A+ +W K
Sbjct: 155 FTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARK 214
Query: 426 GPTKPHNK 403
+ +K
Sbjct: 215 NSEENRDK 222
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 439
F +G + + ++ D T KGY V Y ++A A E ++G + + I +W
Sbjct: 42 FQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 97
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 439
F +G + + ++ D T KGY V Y ++A A E ++G + + I +W
Sbjct: 52 FQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 107
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 439
F +G + + ++ D T KGY V Y ++A A E ++G + + I +W
Sbjct: 155 FQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 210
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
F++ G + ++ D G YA VE+ + QA+ A + ++ +L + + V+W
Sbjct: 66 FNQIGSVTKTKVIFD---GSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEP 122
Query: 426 G 424
G
Sbjct: 123 G 123
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 31.1 bits (67), Expect = 0.64
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 439
F +G + + ++ D T KGY V Y ++A A E ++G + + I +W
Sbjct: 123 FQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNW 178
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 31.1 bits (67), Expect = 0.64
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 543 KGYALVEYETYKQAASAREALDGADILGQAISV 445
KG+A + +T A SA+EA+DG I G+ + V
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRV 182
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 31.1 bits (67), Expect = 0.64
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 543 KGYALVEYETYKQAASAREALDGADILGQAISV 445
KG+A + +T A SA+EA+DG I G+ + V
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRV 182
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 30.7 bits (66), Expect = 0.85
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVD 442
F G + + + DR +G KG+A VE+ T K+ A+ + + G+ I VD
Sbjct: 98 FHGCGSVSRVTIQCDRFSGHPKGFAYVEF-TEKEGMQNALAMTDSLLRGRQIKVD 151
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 445
FS G ++++++ D RTG KG VE+ +++ AL+G ++G + +
Sbjct: 45 FSAVGAVRDVRIITDSRTGRSKGICYVEFWD-EESVPLGLALNGQRLMGAPLQI 97
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 445
FS G ++++++ D RTG KG VE+ +++ AL+G ++G + +
Sbjct: 190 FSAVGAVRDVRIITDSRTGRSKGICYVEFWD-EESVPLGLALNGQRLMGAPLQI 242
>Z92806-4|CAB07259.1| 727|Caenorhabditis elegans Hypothetical
protein K10G4.4 protein.
Length = 727
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQA 502
F E G +Q I L++D+RT L ++V E +KQA
Sbjct: 420 FFEPGPLQAIMLDMDKRTTALNLESIVSLEQWKQA 454
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASARE 487
F YG IQ++ + D TG +G+A + +++ A A E
Sbjct: 45 FKRYGSIQSVNMFYDPDTGLHRGFASITFDSKDGANKAIE 84
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 540 GYALVEYETYKQAASAREALDGADILGQAISVD 442
G+A VEY+ + A A ALDG+ I G V+
Sbjct: 40 GFAFVEYDDVRDAEDAVRALDGSRICGVRARVE 72
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 540 GYALVEYETYKQAASAREALDGADILGQAISVD 442
G+A VEY+ + A A ALDG+ I G V+
Sbjct: 40 GFAFVEYDDVRDAEDAVRALDGSRICGVRARVE 72
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 540 GYALVEYETYKQAASAREALDGADILGQAISVD 442
G+A VEY+ + A A ALDG+ I G V+
Sbjct: 40 GFAFVEYDDVRDAEDAVRALDGSRICGVRARVE 72
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISVDW 439
F G ++ + + LDR G+ VEY T + A A + + + + I DW
Sbjct: 57 FGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQNISNTRMDDRVIRADW 112
>Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical
protein C01B9.1b protein.
Length = 1671
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAA 499
F + G +Q+I L++D+RT + ++V E ++QAA
Sbjct: 474 FFQPGPLQSIMLDMDKRTTAMNLESIVRLEQWEQAA 509
>Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical
protein C01B9.1a protein.
Length = 1601
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAA 499
F + G +Q+I L++D+RT + ++V E ++QAA
Sbjct: 404 FFQPGPLQSIMLDMDKRTTAMNLESIVRLEQWEQAA 439
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 534 ALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
ALVE+E+ + A +A+ A++GADI ++ F K
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = -1
Query: 534 ALVEYETYKQAASAREALDGADILGQAISVDWCFVK 427
ALVE+E+ + A +A+ A++GADI ++ F K
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 445
F YG I ++ + D+ + KG+ V + + A A + DG + G+ + V
Sbjct: 39 FERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRV 92
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDGADILGQAISV 445
F YG I ++ + D+ + KG+ V + + A A + DG + G+ + V
Sbjct: 39 FERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRV 92
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDG 475
FS +G I + ++ D G KGY V +ET A +A E ++G
Sbjct: 165 FSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNG 207
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 606 FSEYGGIQNIQLNLDRRTGFLKGYALVEYETYKQAASAREALDG 475
FS +G I + ++ D G KGY V +ET A +A E ++G
Sbjct: 165 FSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNG 207
>AL117203-10|CAB60424.2| 855|Caenorhabditis elegans Hypothetical
protein Y48C3A.14 protein.
Length = 855
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 152 KLVPTFSLCKFFFNNP 199
KL TF+LC F FNNP
Sbjct: 673 KLARTFTLCPFCFNNP 688
>AL032657-7|CAA21740.1| 340|Caenorhabditis elegans Hypothetical
protein Y47H9C.7 protein.
Length = 340
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 125 ANRNPIVILKLVPTFSLCKFFFNNPMS 205
A R+ + + L P + LC FF NP S
Sbjct: 247 AKRHCVPVYVLAPFYKLCPFFMTNPDS 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,245,232
Number of Sequences: 27780
Number of extensions: 272834
Number of successful extensions: 587
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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