Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J06
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 225 4e-60
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 101 9e-23
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 97 1e-21
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 59 4e-10
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.77
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 27 1.8
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 4.1
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 5.4
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 9.5
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 9.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 225 bits (549), Expect = 4e-60
Identities = 98/122 (80%), Positives = 115/122 (94%)
Frame = +3
Query: 9 DPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKM 188
DPRHGRYLTVAA+FRG++SMKEVDEQ+ ++Q KNS+YFVEWIP+NV AVC +PP+ LKM
Sbjct: 304 DPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKM 363
Query: 189 AATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 368
+ATFIGNST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ
Sbjct: 364 SATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423
Query: 369 QY 374
QY
Sbjct: 424 QY 425
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 101 bits (241), Expect = 9e-23
Identities = 44/129 (34%), Positives = 75/129 (58%), Gaps = 8/129 (6%)
Frame = +3
Query: 9 DPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLK- 185
DPR GRY+ ++RG + ++V + I+ K + FV+W P K +CD PP+ ++
Sbjct: 306 DPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEG 365
Query: 186 -------MAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 344
A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 366 SEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 425
Query: 345 NDLVSEYQQ 371
L +Y++
Sbjct: 426 AALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 97.1 bits (231), Expect = 1e-21
Identities = 42/129 (32%), Positives = 75/129 (58%), Gaps = 8/129 (6%)
Frame = +3
Query: 9 DPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGL-- 182
DPR GRY+ ++RG + ++V + +I+++ + FV+W P K +C PP+ +
Sbjct: 310 DPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPG 369
Query: 183 ------KMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 344
A + N+T+I E + R+ +F M+ ++AF+HWY GEGM+E EF+EA ++
Sbjct: 370 SGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 429
Query: 345 NDLVSEYQQ 371
L +Y++
Sbjct: 430 AALERDYEE 438
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 59.3 bits (137), Expect = 4e-10
Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Frame = +3
Query: 27 YLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMAAT 197
++++ I +G +V + +L I+ + + F+ W P +++ A+ P +++
Sbjct: 317 FISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL 376
Query: 198 FIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DLVSEYQ 368
+ N T+I LFKR +Q+ + +R AFL Y E + E + E +S+ + DL++EY+
Sbjct: 377 MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.77
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 207 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 314
NS+ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 45 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG--NSTA 218
++ + ++ + + ++NI+ N S W+PN + +P G K++ I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 219 IQELFK 236
+EL++
Sbjct: 403 KEELYE 408
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 24 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 149
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +3
Query: 24 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 140
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 201 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 362
+ N + L+K + E+F+ +F RK L WY G+ E + N+N SE
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSE 1751
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 84 QMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG 206
++ +I+ K S++ E +P + TAV P GL +A TF+G
Sbjct: 375 RLWSIKEKAVSFWNE-LPELI-TAVAFSPDGGLAIAGTFVG 413
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,766
Number of Sequences: 5004
Number of extensions: 26756
Number of successful extensions: 98
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -