Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J05
(282 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 38 4e-04
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 25 1.6
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 25 2.1
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 25 2.1
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 2.1
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 2.7
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 24 3.6
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 24 4.7
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 24 4.7
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 23 6.3
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc... 23 6.3
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 23 6.3
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 23 8.3
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 23 8.3
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 23 8.3
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 23 8.3
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 37.5 bits (83), Expect = 4e-04
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +3
Query: 123 ENGSDYDSSQNSIDSNLNSSEYINK-KKTMKK-GIIYLSTIGPYMNVAKIREIFS 281
EN D ++++N+ S E + K +K +K+ G+IYLS I PYM K+R+I S
Sbjct: 89 ENELDEETTKNANSIKKISLEEVEKQRKAIKRSGVIYLSRIPPYMAPNKLRQILS 143
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 25.4 bits (53), Expect = 1.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 111 ERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
E N SQ S+DSNL S+E+ + ++ ++K
Sbjct: 69 EEWKSNAKTIKDSQGSLDSNLLSAEFRSFQEKLEK 103
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.0 bits (52), Expect = 2.1
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = +3
Query: 87 IMPDIKNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKKGIIYLSTI 239
I+P ++RVP+ S + S+ + L+++ K + +K G +Y ++
Sbjct: 126 IVPVWGKVQRVPQAKSSSATITPSVSNKLSTAYQSIKSEALKDGPMYADSV 176
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 25.0 bits (52), Expect = 2.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 107 IFYIWHYKFL*SIKL*PFYYFFFTLNKI 24
+F IW K+L YYFF ++K+
Sbjct: 333 LFRIWWLKYLGPFSYLILYYFFLDISKL 360
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.0 bits (52), Expect = 2.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 93 PD-IKNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
PD IKNIER E D S + N E I ++ ++K
Sbjct: 270 PDLIKNIEREEEAEETSDDEPLSSEDEENEDEDITEESNLRK 311
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 24.6 bits (51), Expect = 2.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 131 AIFRHSFDIFYIWHYKFL*SIKL*PFYYFFFTLNKINYF 15
AIF H +D + + F L F+ F FT N+F
Sbjct: 94 AIFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFF 132
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 24.2 bits (50), Expect = 3.6
Identities = 8/15 (53%), Positives = 14/15 (93%)
Frame = +3
Query: 114 RVPENGSDYDSSQNS 158
++PE+GSD+ SSQ++
Sbjct: 390 KIPESGSDHPSSQDN 404
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 23.8 bits (49), Expect = 4.7
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +3
Query: 99 IKNIERVPENG-----SDYDSSQNSIDSNLNSSEYINKKKTMKKG 218
+K+I V E+G S++DS+ +DS L S KK+++ G
Sbjct: 97 LKDICHVNEDGNVAFDSEFDSNLKLLDSELKSWLKAQKKRSVPNG 141
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 23.8 bits (49), Expect = 4.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 123 ENGSDYDSSQNSIDSNLNSSEYINKKKTMKKGIIYLSTIGPYMN 254
EN S++ S + S+ N NSS K+K + + + I Y N
Sbjct: 68 ENKSNFFSEKQSVRENGNSSAGEKKQKWTSEQHLLVQKIIKYKN 111
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 23.4 bits (48), Expect = 6.3
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 135 DYDSSQNSIDSNLNSSEYINKKKTMKKGIIYL 230
++ + Q + D+ + +YIN++ K +IYL
Sbjct: 282 EFFNDQPTDDTKVYDDDYINERGEKKLSLIYL 313
>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 23.4 bits (48), Expect = 6.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 96 DIKNIERVPENGSDYDSSQNSIDSNLNSSEY 188
D+KNI ++ + S +S D NL+S+ +
Sbjct: 237 DLKNIMQLEDESVSTTSVHDSEDDNLDSNNF 267
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 23.4 bits (48), Expect = 6.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 90 MPDIKNIERVPENGSDYDSSQNSIDSNLNS 179
MP ++ ENG+DY +SQ SN N+
Sbjct: 407 MPTANSMPVKLENGTDYSTSQEP-SSNANN 435
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 23.0 bits (47), Expect = 8.3
Identities = 9/35 (25%), Positives = 17/35 (48%)
Frame = +3
Query: 90 MPDIKNIERVPENGSDYDSSQNSIDSNLNSSEYIN 194
+ D N + + + D S+NS+D N + I+
Sbjct: 323 LEDSNNSAELAKETKEEDDSENSVDKKENEEDIIS 357
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 23.0 bits (47), Expect = 8.3
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 96 DIKNI-ERVPENGSDYDSSQNSIDSNLNSSEYINKK 200
+I N+ ER E DY++ Q ++ +L +S ++N K
Sbjct: 545 EINNLLERRNELLDDYNNVQKILNESLEASVHLNTK 580
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 23.0 bits (47), Expect = 8.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 111 ERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
E + +GS+ D ++S DSN +S KKK +KK
Sbjct: 35 EDLSMDGSN-DGVKDSPDSNDDSQSKKKKKKKLKK 68
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 23.0 bits (47), Expect = 8.3
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 120 PENGSDYDSSQNSIDSNLNSSEYINKKKT--MKKGIIYLSTIGPYMNVAKIREI 275
P +GSD+ N+ L + I KKKT +K L+ + + A++ I
Sbjct: 812 PSDGSDFSDCINAQLVALGMASVIPKKKTSHFEKDTASLNILEEHQQEARLNHI 865
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 926,763
Number of Sequences: 5004
Number of extensions: 14629
Number of successful extensions: 57
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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