Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J05
         (282 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    28   6.3  
AF227136-1|AAF43909.1|  307|Homo sapiens candidate taste recepto...    28   6.3  
AB199075-1|BAD97976.1|  281|Homo sapiens bitter taste receptor T...    28   6.3  
BC117134-1|AAI17135.1| 1709|Homo sapiens chromodomain helicase D...    27   8.4  
AF006513-1|AAB87381.1| 1709|Homo sapiens CHD1 protein.                 27   8.4  

>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -2

Query: 215 FLHCFLLIYIFTRVQITIYTVLATIVI*AIFRHSFDIFYIWHYKFL 78
           ++  ++ IY++  + + IY  + T +   IF + +   YI+ Y +L
Sbjct: 20  YIFIYIYIYVYVYIYLYIYFYIFTYIYLYIFIYIYICLYIYLYIYL 65


>AF227136-1|AAF43909.1|  307|Homo sapiens candidate taste receptor
           T2R10 protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 84  LIMPDIKNIERVPENGSDYDSSQNSI-DSNLNSSEYINKKKTMKKGIIYLSTI 239
           L++  + N   + +  +DY +  +++ D N+  SEY  K+  +  G+I+  T+
Sbjct: 136 LLISSLLNFAYIAKILNDYKTKNDTVWDLNMYKSEYFIKQILLNLGVIFFFTL 188


>AB199075-1|BAD97976.1|  281|Homo sapiens bitter taste receptor
           T2R10 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 84  LIMPDIKNIERVPENGSDYDSSQNSI-DSNLNSSEYINKKKTMKKGIIYLSTI 239
           L++  + N   + +  +DY +  +++ D N+  SEY  K+  +  G+I+  T+
Sbjct: 123 LLISSLLNFAYIAKILNDYKTKNDTVWDLNMYKSEYFIKQILLNLGVIFFFTL 175


>BC117134-1|AAI17135.1| 1709|Homo sapiens chromodomain helicase DNA
            binding protein 1 protein.
          Length = 1709

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 105  NIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKKGIIY 227
            ++ER+ EN +  DSS++S  S+ + ++Y +  K   +G  Y
Sbjct: 1526 DVERLKENTNHDDSSRDSYSSDRHLTQYHDHHKDRHQGDSY 1566


>AF006513-1|AAB87381.1| 1709|Homo sapiens CHD1 protein.
          Length = 1709

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 105  NIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKKGIIY 227
            ++ER+ EN +  DSS++S  S+ + ++Y +  K   +G  Y
Sbjct: 1526 DVERLKENTNHDDSSRDSYSSDRHLTQYHDHHKDRHQGDSY 1566


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,009,415
Number of Sequences: 237096
Number of extensions: 455139
Number of successful extensions: 839
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1386033866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)