Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J05
         (282 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039713-1|AAB96725.1|  268|Caenorhabditis elegans Hypothetical ...    32   0.055
U55374-1|AAP82639.1|  392|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z82052-8|CAD89751.2|  325|Caenorhabditis elegans Hypothetical pr...    26   3.6  
Z73426-7|CAB60290.1|  338|Caenorhabditis elegans Hypothetical pr...    26   4.8  
U13643-4|AAA21082.2|  258|Caenorhabditis elegans Hypothetical pr...    26   4.8  
AL110480-3|CAB60328.1|  338|Caenorhabditis elegans Hypothetical ...    26   4.8  
AF125954-1|AAK68174.1|  340|Caenorhabditis elegans Serpentine re...    26   4.8  
AC006769-2|AAF60583.2|  340|Caenorhabditis elegans Hypothetical ...    26   4.8  
Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical pr...    25   6.3  
L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical pr...    25   6.3  
AL110485-6|CAB60353.1|  193|Caenorhabditis elegans Hypothetical ...    25   6.3  
Z81131-4|CAD01083.1|  415|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z79605-8|CAE18060.2|  340|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z75542-2|CAA99862.2|  712|Caenorhabditis elegans Hypothetical pr...    25   8.4  
U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine rece...    25   8.4  
U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body prot...    25   8.4  
AL034489-11|CAL49453.1|  340|Caenorhabditis elegans Hypothetical...    25   8.4  

>AF039713-1|AAB96725.1|  268|Caenorhabditis elegans Hypothetical
           protein F57B10.8 protein.
          Length = 268

 Score = 32.3 bits (70), Expect = 0.055
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = +3

Query: 81  ELIMPDIKNIE---RVPENGSDYDSSQNSIDSNLNSSEYIN--KKKTMKKGIIYLSTIGP 245
           E++ P  ++IE      E G+  DS   + +S  +  E     ++K  K G+++ STI P
Sbjct: 32  EMLEPKEESIETDNNEDEAGNLDDSEIKTEESEDDEMETFEDPEQKQKKTGVVFFSTIPP 91

Query: 246 YMNVAKIREIF 278
             NV ++RE F
Sbjct: 92  KYNVVRMREYF 102


>U55374-1|AAP82639.1|  392|Caenorhabditis elegans Hypothetical
           protein T02C5.1b protein.
          Length = 392

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 102 KNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKKG 218
           +N+E +  N  +YD ++NS++   +S E+     T ++G
Sbjct: 132 ENLEMIDSNEINYDMARNSLEDVYDSQEHQLPDPTYEEG 170


>Z82052-8|CAD89751.2|  325|Caenorhabditis elegans Hypothetical
           protein T25E12.13 protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/76 (25%), Positives = 36/76 (47%)
 Frame = -2

Query: 236 RRQIYDPFLHCFLLIYIFTRVQITIYTVLATIVI*AIFRHSFDIFYIWHYKFL*SIKL*P 57
           R  ++ PF+     IYIF  +Q TI+ +L  + I    ++   + + +  ++L  I   P
Sbjct: 93  RMILWIPFIFFMASIYIFHILQQTIHLLLFLLAIINSLKYRSPLHFAFKAQYLNYIT--P 150

Query: 56  FYYFFFTLNKINYFLN 9
              FF  L+   + L+
Sbjct: 151 LNVFFVLLDVAAFMLH 166


>Z73426-7|CAB60290.1|  338|Caenorhabditis elegans Hypothetical
           protein Y24F12A.2 protein.
          Length = 338

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 96  DIKNIERVPENGSDYDSSQNSI 161
           D+ +I  V ENGS+YD   +S+
Sbjct: 258 DLSSIYGVAENGSNYDERSSSV 279


>U13643-4|AAA21082.2|  258|Caenorhabditis elegans Hypothetical
           protein T07E3.3 protein.
          Length = 258

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 144 SSQNSIDSNLNSSEYINKKKTMKKGIIYLSTIGPYMNVAKIREIF 278
           S +N    + N  E ++ K T   G+I L+  G  + V KI +IF
Sbjct: 187 SPENRSILHKNCKEAVDFKLTEAPGLILLTDEGDTIKVDKINDIF 231


>AL110480-3|CAB60328.1|  338|Caenorhabditis elegans Hypothetical
           protein Y24F12A.2 protein.
          Length = 338

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 96  DIKNIERVPENGSDYDSSQNSI 161
           D+ +I  V ENGS+YD   +S+
Sbjct: 258 DLSSIYGVAENGSNYDERSSSV 279


>AF125954-1|AAK68174.1|  340|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 60 protein.
          Length = 340

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 191 YIFTRVQITIYTVLATIVI*AIFRHSFDIFYIWHYK 84
           Y+ T++ I+ YTV   I + A+F     I++I  Y+
Sbjct: 260 YVGTQILISQYTVCFMITLPALFDPILQIYFIVPYR 295


>AC006769-2|AAF60583.2|  340|Caenorhabditis elegans Hypothetical
           protein Y45G12C.7 protein.
          Length = 340

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 191 YIFTRVQITIYTVLATIVI*AIFRHSFDIFYIWHYK 84
           Y+ T++ I+ YTV   I + A+F     I++I  Y+
Sbjct: 260 YVGTQILISQYTVCFMITLPALFDPILQIYFIVPYR 295


>Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical
           protein F22D6.10 protein.
          Length = 302

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 123 ENGSDYDSSQNSIDSNLNSSEYINKK 200
           ENG+D  + Q+  D N  S EY N +
Sbjct: 108 ENGTDGQAGQDGQDGNTPSEEYGNSQ 133


>L25599-1|AAA28053.1|  343|Caenorhabditis elegans Hypothetical
           protein F54H12.4 protein.
          Length = 343

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/30 (33%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = +3

Query: 99  IKNIERVP-ENGSDYDSSQNSIDSNLNSSE 185
           I+    +P ENGS+Y+S++  +++ L++S+
Sbjct: 4   IRKYHMIPYENGSEYESAKRFLENILSASD 33


>AL110485-6|CAB60353.1|  193|Caenorhabditis elegans Hypothetical
           protein Y46G5A.8 protein.
          Length = 193

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 245 RTNRRQIYDPFLHCFLLIYIFTRVQITIYTVLATI--VI*AIFRHSFDIFYIWHY 87
           +T R + +  FL+     YIF+ + ++I+   + +  +   +    F I Y+W Y
Sbjct: 139 KTQRYEQFCEFLYALFGFYIFSSLFLSIFVRFSFLYPIFLILLIVIFSIVYLWKY 193


>Z81131-4|CAD01083.1|  415|Caenorhabditis elegans Hypothetical
           protein T24D1.5 protein.
          Length = 415

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 123 ENGSDYDSSQNSIDSNLNSSE 185
           ++ S+YD  ++SIDS + S+E
Sbjct: 260 DSDSEYDDEEDSIDSPIGSTE 280


>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
           protein F16B12.6 protein.
          Length = 1392

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 126 NGSDYDSSQNSIDSNLNSSEYINKKKTMKKGIIYLS 233
           NG D + + + ID   N + Y ++ + +  G +YL+
Sbjct: 719 NGFDPEFNDDPIDKAENPNAYYDEPRVLSTGHVYLT 754


>Z79605-8|CAE18060.2|  340|Caenorhabditis elegans Hypothetical
           protein ZK678.8 protein.
          Length = 340

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 122 RHSFDIFYIWHYKF 81
           +HSFD F ++HY++
Sbjct: 308 KHSFDDFVVYHYQY 321


>Z75549-7|CAD60423.1|  306|Caenorhabditis elegans Hypothetical
           protein T19C4.8 protein.
          Length = 306

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -3

Query: 226 YMIPFFIVFFLFIYSLEFK 170
           +++PFF+ + +F+Y   F+
Sbjct: 137 FIVPFFVTYHIFLYDTYFQ 155


>Z75542-2|CAA99862.2|  712|Caenorhabditis elegans Hypothetical
           protein F55D12.2 protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 135 DYDSSQNSIDSNLNSSEYINKKKTMKK 215
           D DSS++S+D +    E+I K ++ K+
Sbjct: 170 DADSSKHSLDDDQKLEEFITKLQSTKR 196


>U53339-5|AAA96201.1|  342|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 16 protein.
          Length = 342

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = -2

Query: 254 IHVRTNRRQIYDPFLHCFLLIYIFTRVQITIYTVLATIVI*AIFRHSFDIFYIWHYKF 81
           IHV      I    + C L   + T+V + I  +LATI I   + H+   ++I  Y F
Sbjct: 94  IHVSMVPYAIVHSSIACCLFCGMLTQVFMVIERLLATIKI-ESYEHNTSFWHILAYLF 150


>U40802-3|AAM81105.1|  369|Caenorhabditis elegans Dense body protein
           1, isoform b protein.
          Length = 369

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 108 IERVPENGSD-YDSSQNSIDSNLNSSEYINKKKTMKKGIIYLSTIGPYMNVAK 263
           I R   + SD YDSS    + +  + EY+ K + +      L TI P +N AK
Sbjct: 3   INRYSSSVSDHYDSSDEYDNYSEQNYEYVYKTRLVPFNPQVLITIPPMVNNAK 55


>AL034489-11|CAL49453.1|  340|Caenorhabditis elegans Hypothetical
           protein ZK678.8 protein.
          Length = 340

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 122 RHSFDIFYIWHYKF 81
           +HSFD F ++HY++
Sbjct: 308 KHSFDDFVVYHYQY 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,937,971
Number of Sequences: 27780
Number of extensions: 75522
Number of successful extensions: 301
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)