Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J05
(282 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 1.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 1.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 1.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 1.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 1.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 1.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 1.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 1.2
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 2.2
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 2.9
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 2.9
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 2.9
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 20 5.0
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 20 5.0
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 20 5.0
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 20 5.0
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 20 5.0
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 20 6.7
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 20 6.7
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 20 6.7
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 20 6.7
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.2 bits (45), Expect = 1.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 176 VQITIYTVLATIVI 135
+ T++TVLATIVI
Sbjct: 438 IVFTLFTVLATIVI 451
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.2 bits (45), Expect = 1.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 176 VQITIYTVLATIVI 135
+ T++TVLATIVI
Sbjct: 438 IVFTLFTVLATIVI 451
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.2 bits (45), Expect = 1.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 176 VQITIYTVLATIVI 135
+ T++TVLATIVI
Sbjct: 438 IVFTLFTVLATIVI 451
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.2 bits (45), Expect = 1.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 176 VQITIYTVLATIVI 135
+ T++TVLATIVI
Sbjct: 438 IVFTLFTVLATIVI 451
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.2 bits (45), Expect = 1.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 176 VQITIYTVLATIVI 135
+ T++TVLATIVI
Sbjct: 438 IVFTLFTVLATIVI 451
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.2 bits (45), Expect = 1.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 176 VQITIYTVLATIVI 135
+ T++TVLATIVI
Sbjct: 438 IVFTLFTVLATIVI 451
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 1.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 176 VQITIYTVLATIVI 135
+ T++TVLATIVI
Sbjct: 506 IVFTLFTVLATIVI 519
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.2 bits (45), Expect = 1.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 176 VQITIYTVLATIVI 135
+ T++TVLATIVI
Sbjct: 506 IVFTLFTVLATIVI 519
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.4 bits (43), Expect = 2.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 102 KNIERVPENGSDYDSSQNSIDSNLNSSEYIN 194
KN+ + NGS +S QN + LN+ + ++
Sbjct: 818 KNMRVLYVNGSGIESIQNRTFNGLNNLQILH 848
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 2.9
Identities = 8/39 (20%), Positives = 20/39 (51%)
Frame = +3
Query: 99 IKNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
+ NIE+ Y +S NS+ S + ++ + + + ++
Sbjct: 197 VVNIEKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRER 235
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 2.9
Identities = 8/39 (20%), Positives = 20/39 (51%)
Frame = +3
Query: 99 IKNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
+ NIE+ Y +S NS+ S + ++ + + + ++
Sbjct: 197 VVNIEKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRER 235
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.0 bits (42), Expect = 2.9
Identities = 8/39 (20%), Positives = 20/39 (51%)
Frame = +3
Query: 99 IKNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
+ NIE+ Y +S NS+ S + ++ + + + ++
Sbjct: 197 VVNIEKSGNESKKYATSSNSLRSRTHDFQHTSSRYSRER 235
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 20.2 bits (40), Expect = 5.0
Identities = 7/39 (17%), Positives = 21/39 (53%)
Frame = +3
Query: 99 IKNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
+ NIE+ + Y +S NS+ + + ++ + + + ++
Sbjct: 186 VVNIEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSRER 224
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 20.2 bits (40), Expect = 5.0
Identities = 7/39 (17%), Positives = 21/39 (53%)
Frame = +3
Query: 99 IKNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
+ NIE+ + Y +S NS+ + + ++ + + + ++
Sbjct: 197 VVNIEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSRER 235
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 20.2 bits (40), Expect = 5.0
Identities = 7/39 (17%), Positives = 21/39 (53%)
Frame = +3
Query: 99 IKNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
+ NIE+ + Y +S NS+ + + ++ + + + ++
Sbjct: 197 VVNIEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSRER 235
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 20.2 bits (40), Expect = 5.0
Identities = 7/39 (17%), Positives = 21/39 (53%)
Frame = +3
Query: 99 IKNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
+ NIE+ + Y +S NS+ + + ++ + + + ++
Sbjct: 186 VVNIEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSRER 224
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 20.2 bits (40), Expect = 5.0
Identities = 7/39 (17%), Positives = 20/39 (51%)
Frame = +3
Query: 99 IKNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
+ NIE+ Y +S NS+ + + ++ + + + ++
Sbjct: 186 VVNIEKSENESKKYATSSNSLRNRTHGFQHTSSRYSRER 224
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 19.8 bits (39), Expect = 6.7
Identities = 7/39 (17%), Positives = 20/39 (51%)
Frame = +3
Query: 99 IKNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
+ NIE+ Y +S NS+ + + ++ + + + ++
Sbjct: 197 VVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRER 235
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 19.8 bits (39), Expect = 6.7
Identities = 7/39 (17%), Positives = 20/39 (51%)
Frame = +3
Query: 99 IKNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
+ NIE+ Y +S NS+ + + ++ + + + ++
Sbjct: 202 VVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRER 240
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 19.8 bits (39), Expect = 6.7
Identities = 7/39 (17%), Positives = 20/39 (51%)
Frame = +3
Query: 99 IKNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
+ NIE+ Y +S NS+ + + ++ + + + ++
Sbjct: 197 VVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRER 235
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 19.8 bits (39), Expect = 6.7
Identities = 7/39 (17%), Positives = 20/39 (51%)
Frame = +3
Query: 99 IKNIERVPENGSDYDSSQNSIDSNLNSSEYINKKKTMKK 215
+ NIE+ Y +S NS+ + + ++ + + + ++
Sbjct: 197 VVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRER 235
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,676
Number of Sequences: 438
Number of extensions: 1061
Number of successful extensions: 21
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used: 5494764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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