Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J04
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   3.6  
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    25   3.6  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    24   6.3  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    23   8.3  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 129  VLCSLF*TFNQNYWLQSSIKGYGRY 55
            V+C L    NQN+W+ + I    R+
Sbjct: 1157 VICFLISVINQNFWMSTLISQAWRF 1181


>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 272 GAESDPHFKKKASDDATIAKITRKLIIRLVCM 177
           G ++ P F KKA       K+T+K+++RL C+
Sbjct: 51  GGQTKPVFHKKA-------KVTKKVVLRLECV 75


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 135 ICVLCSLF*TFNQNYWLQSSIK 70
           IC L  +  TF+ +YW Q  ++
Sbjct: 5   ICTLTCILPTFSMDYWNQECVE 26


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +1

Query: 223 VASSDAFFLKWG--SDSAPPSSQKTWVQPLSP 312
           V+SS +    W   + SA PS+   W QP +P
Sbjct: 416 VSSSTSSPAPWAKPASSAAPSNPAPWQQPAAP 447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,347,490
Number of Sequences: 5004
Number of extensions: 23308
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)