Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J04
         (316 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0220 - 6531255-6532667                                           29   0.77 
07_01_1039 - 9037689-9038225,9038831-9040627                           26   7.1  

>03_02_0220 - 6531255-6532667
          Length = 470

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 10  VGARIFVPKINEYFCVTPITLYTRL 84
           VGAR  + K+ E+ CVT + +YT L
Sbjct: 204 VGARQLIEKMPEFGCVTNVAVYTAL 228


>07_01_1039 - 9037689-9038225,9038831-9040627
          Length = 777

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 239 ASDDATIAKITRKLIIRLVCMCISLP 162
           A DDA    +T+K++ RL C  +S P
Sbjct: 649 ADDDAMNRGVTKKILERLGCQVMSAP 674


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,812,673
Number of Sequences: 37544
Number of extensions: 149611
Number of successful extensions: 321
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)