Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J04
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine r...    27   2.8  
U97009-3|AAC69031.1|  619|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine...    25   8.7  
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    25   8.7  
AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholin...    25   8.7  

>AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein98 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 193 MMSFLVILAIVASSDAFFLKWGSDSAPPSS 282
           +  F+ ++A + SS  FF + G+D  PP S
Sbjct: 79  LCDFVAMIATIVSSGMFFDEEGTDCTPPVS 108


>U97009-3|AAC69031.1|  619|Caenorhabditis elegans Hypothetical
           protein T19H12.6 protein.
          Length = 619

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 193 MMSFLVILAIVASSDAFFLKWGSDSAPPSSQKT 291
           ++ F+VILA+V    AFFL     S+  S   T
Sbjct: 104 LVQFIVILALVLGLIAFFLTRSESSSTTSEYST 136


>U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical
           protein T19A5.5 protein.
          Length = 511

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -3

Query: 122 VHFFEPLIKTTGSNRV*RVMGVTQKYSLILGTKMR 18
           V++FE    +  S+R+ +++ + +KY  I+G K +
Sbjct: 450 VYYFEQDRMSRYSHRLLKILKINEKYKTIMGEKRK 484


>AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine
           receptor (62.5 kD)(acr-23) protein.
          Length = 545

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 193 MMSFLVILAIVASSDAFFLKWGSDSAPPSSQ-KTWVQPLSP 312
           M++ + +  + ASS  F  K GS   PP+S+   W   ++P
Sbjct: 327 MITIISVGTLAASSVIFVQKLGSIGNPPASKTMKWTHRIAP 367


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 202 FLVILAIVASSDAFFLKWGSDSAPPSSQKTW 294
           FL ++  ++S D     +GSD  PP+S  T+
Sbjct: 78  FLSMIVSISSKDMILNFYGSDCTPPNSFLTF 108


>AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholine
           receptor protein 23 protein.
          Length = 545

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 193 MMSFLVILAIVASSDAFFLKWGSDSAPPSSQ-KTWVQPLSP 312
           M++ + +  + ASS  F  K GS   PP+S+   W   ++P
Sbjct: 327 MITIISVGTLAASSVIFVQKLGSIGNPPASKTMKWTHRIAP 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,560,949
Number of Sequences: 27780
Number of extensions: 135079
Number of successful extensions: 262
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)