Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J04
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   0.50 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   0.50 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   3.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   6.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   6.2  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 0.50
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 263 SDPHFKKKASDDATIAKIT 207
           SDP F KKA  D  I K++
Sbjct: 211 SDPIFDKKAMSDLVICKLS 229


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.8 bits (49), Expect = 0.50
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 263 SDPHFKKKASDDATIAKIT 207
           SDP F KKA  D  I K++
Sbjct: 211 SDPIFDKKAMSDLVICKLS 229


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 217 AIVASSDAFFLKWGSDSAPPSSQKTWVQPLSP 312
           A + S+   +   GS S  PSS  ++   +SP
Sbjct: 74  AAITSTSPSYPGGGSSSPSPSSPSSFFSSVSP 105


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 265  SAPPSSQKTWVQPLSPN 315
            S+P +   +W+ PL PN
Sbjct: 1225 SSPQALFISWLPPLEPN 1241


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 265  SAPPSSQKTWVQPLSPN 315
            S+P +   +W+ PL PN
Sbjct: 1221 SSPQALFISWLPPLEPN 1237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,439
Number of Sequences: 438
Number of extensions: 1574
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)