Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_J03
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 62 5e-11
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 53 3e-08
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 52 7e-08
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 51 1e-07
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 50 3e-07
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 45 6e-06
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 44 1e-05
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 43 2e-05
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 28 0.96
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 27 1.3
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 1.3
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 1.7
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 26 3.9
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 3.9
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 6.8
SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyc... 25 9.0
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 9.0
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 62.1 bits (144), Expect = 5e-11
Identities = 28/74 (37%), Positives = 42/74 (56%)
Frame = +1
Query: 274 SLLEGVLKHMRHLPDVQPFFFPVNPKLVADYYRIVSRPMDLQTITDNLRQKHYQSREDFL 453
++LE + M++ P PF PV+ + V DYY ++ PMDL T+ LR Y+S E+F+
Sbjct: 350 AVLEMLFTEMQNHPSSWPFMQPVSKEDVPDYYEVIEHPMDLSTMEFRLRNNQYESVEEFI 409
Query: 454 ADVNQIVENSTLYN 495
D I +N YN
Sbjct: 410 RDAKYIFDNCRSYN 423
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 52.8 bits (121), Expect = 3e-08
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Frame = +1
Query: 178 RTKRRGTGADPCEYL--VRRPAERRRTDPLVTLSSLLEG----VLKHMRHLPDVQPFFFP 339
R+K T AD + L V++ + D + L E VL+ + F
Sbjct: 268 RSKINATDADVKQLLSDVKKNKSKWANDQRIGQEELYEAAEKVVLELRSYTEHSLAFLTK 327
Query: 340 VNPKLVADYYRIVSRPMDLQTITDNLRQKHYQSREDFLADVNQIVENSTLYN 495
V+ + DYY ++ PMDL TI NL+ HY S+++F+ D+ I N LYN
Sbjct: 328 VSKRDAPDYYTVIKEPMDLGTILRNLKNLHYNSKKEFVHDLMLIWSNCFLYN 379
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 51.6 bits (118), Expect = 7e-08
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 289 VLKHMRHLPDVQPFFFPVNP--KLVADYYRIVSRPMDLQTITDNLRQKHYQSREDFLADV 462
+++ ++ + PF PV+P + + DY IV PMDL TI L Y ++F+ D+
Sbjct: 96 IVRQLKRTKNSAPFKVPVDPIKQNIPDYPTIVKNPMDLGTIEKKLTSYEYSVPQEFIDDM 155
Query: 463 NQIVENSTLYNGPTS 507
N + N LYNG S
Sbjct: 156 NLMFSNCFLYNGTES 170
Score = 51.6 bits (118), Expect = 7e-08
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Frame = +1
Query: 202 ADPCEYLVRRPAERRRTDPLVTLSSLLEGVLKHMRHLPDVQPFFFPVNPKLV--ADYYRI 375
A P +P R+ + S++L+ + K ++ PF+ PV+P DY+ +
Sbjct: 238 ASPAVLPEGKPRRRKNNSQMRFCSTVLKELYKR-QYESFAFPFYQPVDPVACDCPDYFDV 296
Query: 376 VSRPMDLQTITDNLRQKHYQSREDFLADVNQIVENSTLYNGPTSSLTV 519
+ PMDL TI L + Y + E+F +D+ + N YN P + + V
Sbjct: 297 IKEPMDLSTIQSKLNKNEYSTLEEFESDILLMFNNCFTYNPPGTPVHV 344
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 50.8 bits (116), Expect = 1e-07
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +1
Query: 229 RPAERRRTDPLVTLSSLLEGVLKHMRHLPDVQPFFFPVNPKLVA--DYYRIVSRPMDLQT 402
+P R+ + S+L+ +LK +H PF+ PVNP DY++++ PMDL T
Sbjct: 384 KPHRRKDAAEMKFCQSVLKELLKK-QHEAYAYPFYKPVNPTACGCPDYFKVIKHPMDLGT 442
Query: 403 ITDNLRQKHYQSREDFLADVNQIVENSTLYN 495
+ + L Y S + F AD+ + +N +N
Sbjct: 443 MQNKLNHNEYASMKAFEADMVLMFKNCYKFN 473
Score = 50.4 bits (115), Expect = 2e-07
Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 18/186 (9%)
Frame = +1
Query: 16 LDTDAEPPS-IEPEDDDLGYV-----------DGTKLTLP---SKIIKQXXXXXXXXXXX 150
LD+ PP + EDD L + DG T+ S IK
Sbjct: 136 LDSHTHPPKRVRNEDDSLTFSKTSPVSPSSLKDGASNTVTNDASNKIKSEASESASPSAL 195
Query: 151 XXXXXXALGRTKRRGTGADPCEYLVRRPAERRRTDPLVTLS-SLLEGVLKHMRHLPDVQP 327
A G +K + D E + + ++ + P+ + +L+ +R D P
Sbjct: 196 QALDSTAAGSSKEHSSPHD--ETVKKEENDKDQYPPMTKEQHKYIHAMLRQLRRGRDSIP 253
Query: 328 FFFPVNP--KLVADYYRIVSRPMDLQTITDNLRQKHYQSREDFLADVNQIVENSTLYNGP 501
F PV+P + + DY I+ P+DL T+ Y S + F+ D+N + N LYNG
Sbjct: 254 FRAPVDPVKQNIPDYPTIIKNPIDLGTMQKKFSSGVYSSAQHFIDDMNLMFSNCFLYNGT 313
Query: 502 TSSLTV 519
S + V
Sbjct: 314 ESPVGV 319
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 49.6 bits (113), Expect = 3e-07
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
Frame = +1
Query: 100 SKIIKQXXXXXXXXXXXXXXXXXALGRTKRRGTGADPCEYLVRRPAERRRTDPLVTLSSL 279
SK +K GR+ G E L RR + + PL +L +
Sbjct: 156 SKFVKNEDEAYDSDLYVEEEDSDVKGRSMVGRDGRYKSEDLKRRKLQPS-SKPLSSLEAR 214
Query: 280 LEGVLKHMRHLPD------VQPFFFPVNPKLVADYYRIVSRPMDLQTITDNLRQKHYQSR 441
+ +++ +R D PF +P++ +YY+ + +PM L+ I L + Y++
Sbjct: 215 AKVIMRQVRRYRDGSGRQLFAPFERLPDPRMFPEYYQAIEQPMALEVIQKKLSKHRYETI 274
Query: 442 EDFLADVNQIVENSTLYNGPTSSL 513
E F+ D N + +N+ +N P+S +
Sbjct: 275 EQFVDDFNLMFDNAKSFNDPSSQV 298
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 45.2 bits (102), Expect = 6e-06
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +1
Query: 349 KLVADYYRIVSRPMDLQTITDNLRQKHYQSREDFLADVNQIVENSTLYNGPTS 507
+L DYY I+ PM ++ + ++ Y + E F+ D+NQ+ N+ YN P S
Sbjct: 177 RLYPDYYEIIKSPMTIKMLEKRFKKGEYTTLESFVKDLNQMFINAKTYNAPGS 229
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 361 DYYRIVSRPMDLQTITDNLRQKHYQSREDFLADVNQIVENSTLYNGPTS 507
DYY+I+ +P+ + + + + Y S DF D+ +V N+ YN P S
Sbjct: 48 DYYQIIQKPICYKMMRNKAKTGKYLSMGDFYDDIRLMVSNAQTYNMPGS 96
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 44.0 bits (99), Expect = 1e-05
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Frame = +1
Query: 325 PFFFPVNPKLVADYYRIVSRPMDLQTITDNLRQKHYQSREDFLADVNQIVENSTLYNG-- 498
PF PVN K DY +V +P DL+T+ + +++ + ++ +V +I N +YNG
Sbjct: 209 PFSHPVNRKEAPDYDSLVYKPQDLRTLKNMIKEGNITEVDELYREVLRIFANCKMYNGSD 268
Query: 499 PTSSLTV 519
P +++++
Sbjct: 269 PANAMSI 275
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 43.2 bits (97), Expect = 2e-05
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +1
Query: 328 FFFPVNPKLVADYYRIVSRPMDLQTITDNLRQKHYQSREDFLADVNQIVENSTLYN 495
F +P N KL DYY I+ RP+ L I N++ Y + +AD + N+ YN
Sbjct: 1544 FLYPPNRKLYPDYYIIIKRPIALGKIKRNIKNDRYGDVGELIADFMLMFNNAYTYN 1599
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 27.9 bits (59), Expect = 0.96
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = -2
Query: 173 NARTSLRRDPLRRLNSSADCLIIFEGKVSLVPS 75
NART+ +R RRL+S L I EGK S +PS
Sbjct: 3 NARTNAKR---RRLSSKQGGLSISEGKESNIPS 32
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 361 DYYRIVSRPMDLQTITDNLRQKHYQSREDFLADVNQ 468
+YY PM + +TDN R + Y+ R D L N+
Sbjct: 144 EYYERFREPMTIPNLTDNERVEMYRRRIDELPIPNR 179
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 194 VPALTPAST*YGDPPSAGVPTLSSLSPPYWRASSNTCAICPT 319
VP T +T PP+ + T ++ +PP +S T + PT
Sbjct: 84 VPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPT 125
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 1.7
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 227 GDPPSAGVPTLSSLSP-PYWRASSNTCAICPTCNRSSFPSTLSWSRITIAS 376
G S+ VP S+LSP P + +T +I P+ N FPS LS S AS
Sbjct: 314 GPSHSSSVP--SNLSPNPAQNENPSTTSI-PSINNQPFPSGLSASNSNFAS 361
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = +1
Query: 307 HLPDVQPFFFPVNPKLVADYYRIVSRPMDLQTITDNLRQKHYQSREDFLADVNQIVENST 486
H P + P +NP+LV + V P +Q+ T SR D + ++++
Sbjct: 437 HAPILNPKNSALNPRLVTNDRVKVKSPSLIQSSTGYGSMSQSPSRSDLPSKISRVNAELQ 496
Query: 487 LYNGPTSSLTV 519
+ SS+ V
Sbjct: 497 AHGSQRSSIDV 507
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 16 LDTDAEPPSIEPEDDDLGYVDGTK 87
L+ PPS+ PE+DDL + TK
Sbjct: 204 LNAGHPPPSLYPENDDLSIQNPTK 227
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 411 IRDGLQIHRSRYDAIVIRDQLRVDGKEER 325
IR+ ++ + +YD +V QL + KE+R
Sbjct: 639 IREAIEENEIKYDILVTTYQLATNNKEDR 667
>SPAC644.18c |bet3||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 183
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 414 IIRDGLQIHRSRYDAIVIRDQLRVDGKEE-RLHV 316
+IR L++ + DA+ +RD LR D E R+H+
Sbjct: 137 VIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHL 170
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 381 RYDAIVIRDQLRVDGKEERLHVGQMAHVFEDALQ*GGESDERVGT 247
+YD + RD L+ D RLH A LQ ES ++ +
Sbjct: 60 KYDFEIDRDSLKSDSGSPRLHQNATAPTSSTPLQSPDESVNKLNS 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.136 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,641
Number of Sequences: 5004
Number of extensions: 34019
Number of successful extensions: 115
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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