Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J03
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    27   0.12 
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    27   0.12 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.6  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = +1

Query: 289 VLKHMRHLPDVQPFFFPVNPKLVADYYRIVSRPMDLQTITDNLRQKHYQ----SRE---D 447
           + +H   +PD +   +P +P L  D+Y     P++   +T++ + + YQ     RE   D
Sbjct: 8   IFRHGDRIPDEKNEMYPKDPYLYYDFY-----PLERGELTNSGKMREYQLGQFLRERYGD 62

Query: 448 FLADV 462
           FL D+
Sbjct: 63  FLGDI 67


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = +1

Query: 289 VLKHMRHLPDVQPFFFPVNPKLVADYYRIVSRPMDLQTITDNLRQKHYQ----SRE---D 447
           + +H   +PD +   +P +P L  D+Y     P++   +T++ + + YQ     RE   D
Sbjct: 23  IFRHGDRIPDEKNEMYPKDPYLYYDFY-----PLERGELTNSGKMREYQLGQFLRERYGD 77

Query: 448 FLADV 462
           FL D+
Sbjct: 78  FLGDI 82


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 116 CLIIFEGKVSLVPS 75
           CL+   G VS VPS
Sbjct: 149 CLVFSSGSVSCVPS 162


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 478 SQQSGLRPQGNLPGS 434
           S  SG+ P  N+PGS
Sbjct: 424 SNMSGMPPLPNMPGS 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,840
Number of Sequences: 438
Number of extensions: 2287
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)