Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J02
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   171   5e-44
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   3.4  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   3.4  
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    25   7.9  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    25   7.9  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  171 bits (417), Expect = 5e-44
 Identities = 86/152 (56%), Positives = 106/152 (69%), Gaps = 3/152 (1%)
 Frame = +2

Query: 80  KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGL-SKGKHGFHVHEFGDNTNGCTSAG 250
           +AV VL GD  VSG V F+Q D++S V V  ++ G  +  K GFH+H+FGDNTNGCTSAG
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 251 AHFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVH 430
            HFNP  + HG   +  RH+GDLGN+E+ + G + K    DS ISL G NSI+GRT+V+H
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNI-KTTFSDSVISLFGANSIIGRTIVIH 121

Query: 431 ADPDDLGLGGHELSKSTGNAGARIACGVIGLA 526
           A  DDLG G  E S  TGNAGAR ACGVIG+A
Sbjct: 122 AGEDDLGKGTSEESLKTGNAGARNACGVIGIA 153


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 416  CVQQCCWVQLTRSESP 369
            C Q+CC + LT S+SP
Sbjct: 1422 CAQECCRILLTDSKSP 1437


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/69 (21%), Positives = 29/69 (42%)
 Frame = +2

Query: 98  HGDVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQE 277
           H     +++FD  DE +    +  +  +++   G +  +  +  NG  S     N  K+E
Sbjct: 24  HPSAGDSIYFDSLDEDADPSRTARIDRIAELLDGLNDEQISELVNGVNSTTIKEN-TKKE 82

Query: 278 HGAPDSDTR 304
              P+  TR
Sbjct: 83  ISNPNDSTR 91


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 469 QFVTSKSEIIRIRMDYQSASNNAVGSN*RDLRVLNANLSNTTITGSFNI 323
           ++VTS +  IR+++D   A+N+ +  N  DLR   A    TT  G+  I
Sbjct: 57  KWVTSNNIKIRVQVDETFANNHLIYKN--DLRSNEAVRFTTTNEGTHRI 103


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 168 KSKDLVRASTVSMYMSLVTIPTVAPLLE 251
           K+KD +RA  +S+Y+ L  I   A LL+
Sbjct: 247 KNKDALRAHLLSLYLVLPLIGVTAGLLK 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,003
Number of Sequences: 5004
Number of extensions: 48969
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)