Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_J02
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc sup...   190   6e-49
L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide dism...   190   6e-49
AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxi...   190   6e-49
AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxi...   190   6e-49
U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide...   178   2e-45
AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide di...   163   6e-41
Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical pr...   162   1e-40
AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.    162   1e-40
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    40   0.001
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    29   1.8  
Z81070-9|CAB03002.1|  132|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U80026-1|AAC25844.1|  355|Caenorhabditis elegans Fucosyl transfe...    27   9.5  
AF016435-5|AAB65881.1|  538|Caenorhabditis elegans Hypothetical ...    27   9.5  

>X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc
           superoxide dismutase protein.
          Length = 158

 Score =  190 bits (463), Expect = 6e-49
 Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 4/156 (2%)
 Frame = +2

Query: 71  MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSA 247
           M  +AV VL G+ V+GT++  QK E+   V+ GE+KGL+ G HGFHVH++GD+TNGC SA
Sbjct: 1   MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60

Query: 248 GAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVV 427
           G HFNP  + HG P S+ RH+GDLGN+EA +D GV K+ + D+ ++L GPN++VGR++VV
Sbjct: 61  GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119

Query: 428 HADPDDLGLG---GHELSKSTGNAGARIACGVIGLA 526
           HA  DDLG G     E SK TGNAGAR ACGVI LA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155


>L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 158

 Score =  190 bits (463), Expect = 6e-49
 Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 4/156 (2%)
 Frame = +2

Query: 71  MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSA 247
           M  +AV VL G+ V+GT++  QK E+   V+ GE+KGL+ G HGFHVH++GD+TNGC SA
Sbjct: 1   MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60

Query: 248 GAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVV 427
           G HFNP  + HG P S+ RH+GDLGN+EA +D GV K+ + D+ ++L GPN++VGR++VV
Sbjct: 61  GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119

Query: 428 HADPDDLGLG---GHELSKSTGNAGARIACGVIGLA 526
           HA  DDLG G     E SK TGNAGAR ACGVI LA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155


>AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform b protein.
          Length = 158

 Score =  190 bits (463), Expect = 6e-49
 Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 4/156 (2%)
 Frame = +2

Query: 71  MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSA 247
           M  +AV VL G+ V+GT++  QK E+   V+ GE+KGL+ G HGFHVH++GD+TNGC SA
Sbjct: 1   MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60

Query: 248 GAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVV 427
           G HFNP  + HG P S+ RH+GDLGN+EA +D GV K+ + D+ ++L GPN++VGR++VV
Sbjct: 61  GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 119

Query: 428 HADPDDLGLG---GHELSKSTGNAGARIACGVIGLA 526
           HA  DDLG G     E SK TGNAGAR ACGVI LA
Sbjct: 120 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 155


>AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform a protein.
          Length = 180

 Score =  190 bits (463), Expect = 6e-49
 Identities = 89/156 (57%), Positives = 115/156 (73%), Gaps = 4/156 (2%)
 Frame = +2

Query: 71  MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSA 247
           M  +AV VL G+ V+GT++  QK E+   V+ GE+KGL+ G HGFHVH++GD+TNGC SA
Sbjct: 23  MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 82

Query: 248 GAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVV 427
           G HFNP  + HG P S+ RH+GDLGN+EA +D GV K+ + D+ ++L GPN++VGR++VV
Sbjct: 83  GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGAD-GVAKIKLTDTLVTLYGPNTVVGRSMVV 141

Query: 428 HADPDDLGLG---GHELSKSTGNAGARIACGVIGLA 526
           HA  DDLG G     E SK TGNAGAR ACGVI LA
Sbjct: 142 HAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALA 177


>U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide
           dismutase) protein5 protein.
          Length = 178

 Score =  178 bits (434), Expect = 2e-45
 Identities = 87/153 (56%), Positives = 105/153 (68%), Gaps = 4/153 (2%)
 Frame = +2

Query: 80  KAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAH 256
           +AV VL G  V GTV+  QK E       GE+KGLS G HGFH+H++GD+T+GCTSAG H
Sbjct: 24  RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83

Query: 257 FNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHAD 436
           FNP K  HG  DS  RH+GDLGN+EA +D GV K+   D  +SL G N+++GR++VVH D
Sbjct: 84  FNPCKMNHGGRDSVVRHVGDLGNVEAGAD-GVAKIKFSDKVVSLFGANTVIGRSMVVHVD 142

Query: 437 PDDLGLG---GHELSKSTGNAGARIACGVIGLA 526
            DDLG G     E S  TGNAGAR ACGVI LA
Sbjct: 143 RDDLGQGIDDKAEESLKTGNAGARAACGVIALA 175


>AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 221

 Score =  163 bits (397), Expect = 6e-41
 Identities = 76/142 (53%), Positives = 99/142 (69%)
 Frame = +2

Query: 104 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHG 283
           ++ GT+ FDQ    S + ++G V GL+ GKHGFH+HE GD  NGC SAG H+NP K  HG
Sbjct: 39  ELIGTIDFDQS--GSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96

Query: 284 APDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHADPDDLGLGGH 463
           APD   RHIGDLGNIE+ + G  T + + DS  SL G  SI+GR++V+H   DDLG G  
Sbjct: 97  APDDSNRHIGDLGNIESPASGD-TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155

Query: 464 ELSKSTGNAGARIACGVIGLAK 529
           + SK+TGNAG+R+ACG IG+ +
Sbjct: 156 DQSKTTGNAGSRLACGTIGIVE 177


>Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical
           protein F55H2.1 protein.
          Length = 176

 Score =  162 bits (394), Expect = 1e-40
 Identities = 76/139 (54%), Positives = 97/139 (69%)
 Frame = +2

Query: 104 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHG 283
           ++ GT+ FDQ    S + ++G V GL+ GKHGFH+HE GD  NGC SAG H+NP K  HG
Sbjct: 39  ELIGTIDFDQS--GSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96

Query: 284 APDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHADPDDLGLGGH 463
           APD   RHIGDLGNIE+ + G  T + + DS  SL G  SI+GR++V+H   DDLG G  
Sbjct: 97  APDDSNRHIGDLGNIESPASGD-TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155

Query: 464 ELSKSTGNAGARIACGVIG 520
           + SK+TGNAG+R+ACG IG
Sbjct: 156 DQSKTTGNAGSRLACGTIG 174


>AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.
          Length = 176

 Score =  162 bits (394), Expect = 1e-40
 Identities = 76/139 (54%), Positives = 97/139 (69%)
 Frame = +2

Query: 104 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHG 283
           ++ GT+ FDQ    S + ++G V GL+ GKHGFH+HE GD  NGC SAG H+NP K  HG
Sbjct: 39  ELIGTIDFDQS--GSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96

Query: 284 APDSDTRHIGDLGNIEASSDGGVTKVCIQDSQISLVGPNSIVGRTLVVHADPDDLGLGGH 463
           APD   RHIGDLGNIE+ + G  T + + DS  SL G  SI+GR++V+H   DDLG G  
Sbjct: 97  APDDSNRHIGDLGNIESPASGD-TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTS 155

Query: 464 ELSKSTGNAGARIACGVIG 520
           + SK+TGNAG+R+ACG IG
Sbjct: 156 DQSKTTGNAGSRLACGTIG 174


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
            T01D3.3b protein.
          Length = 1011

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +2

Query: 143  SSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFN 262
            S+ + + GEV  L  G+H   +H+FGD++ GC+  GA F+
Sbjct: 906  STALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 945


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +2

Query: 143 SSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFN 262
           S+ + + GEV  L  G+H   +H+FGD++ GC+  GA F+
Sbjct: 697 STALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 736


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -2

Query: 509 RRQYGLQHCL*TCSIRDLQVRDHQDPHGLPKCVQQCCWVQLTRSESPECK 360
           ++QY +Q C+  C++ + Q    Q    +P+C QQC   Q  +  +P+C+
Sbjct: 309 KQQYPVQQCIQPCTV-ECQTACQQ---AVPQCQQQCA-PQCYQPSAPQCQ 353


>Z81070-9|CAB03002.1|  132|Caenorhabditis elegans Hypothetical
           protein F26E4.9 protein.
          Length = 132

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 350 VTKVCIQDSQISLVGPNSIVGRTLVVHADPDDLGLGGHELSKSTG 484
           + K  +      LV P ++  RTL   A P+D G     L  +TG
Sbjct: 4   LAKTAVAALSKKLVAPAAVARRTLATEASPEDYGYYPDPLEHATG 48


>U80026-1|AAC25844.1|  355|Caenorhabditis elegans Fucosyl
           transferase protein 2 protein.
          Length = 355

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +2

Query: 383 SLVGPNSIVGRTLVVHADPDDLGLGGHELSKSTGNAGARIACGVIGLAKI*RFLLAYPVI 562
           SL+G    + RT + +AD D L      L K      ARI    I +A+  R+L   P  
Sbjct: 83  SLLGSAQTLNRTAIFNADDDILQSKLDLLQKQVPQVAARIISIPIEIAESTRYLF-LPAC 141

Query: 563 CN 568
           C+
Sbjct: 142 CH 143


>AF016435-5|AAB65881.1|  538|Caenorhabditis elegans Hypothetical
           protein F59D6.6 protein.
          Length = 538

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 409 NNAVGSN*RDLRVLNANLSNTTITGSFNIS*VSNVTSIR 293
           N+   S  ++   LN+ L  + IT  FNI  +SN+ +IR
Sbjct: 199 NSNTISQYKNCTTLNSGLKLSNITKDFNIPALSNINAIR 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,430,730
Number of Sequences: 27780
Number of extensions: 284566
Number of successful extensions: 637
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)