Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I24
(507 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 179 1e-45
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 179 1e-45
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 179 1e-45
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 172 1e-43
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 167 6e-42
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 128 3e-30
08_02_0383 - 16539472-16539633,16543044-16543205 44 9e-05
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062... 37 0.011
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 29 2.1
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500... 29 2.1
01_05_0586 + 23443371-23444645 29 2.1
11_06_0289 - 21969248-21973516 28 5.0
11_06_0185 + 21018045-21022307 28 5.0
03_06_0410 - 33728507-33729415,33729511-33729654,33730054-337309... 28 5.0
01_05_0509 + 22811184-22812038,22813493-22814020 28 5.0
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 27 8.7
04_03_0631 - 18190195-18190686,18190866-18191066 27 8.7
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 179 bits (436), Expect = 1e-45
Identities = 92/149 (61%), Positives = 107/149 (71%), Gaps = 12/149 (8%)
Frame = +1
Query: 13 MADQTEKAFQKQATVFLNRKGGMKRKDM-----RHSKNVGLGFKTPREAVEGTYIDKKCP 177
MA+QTE+AF KQ VFL K K K R KN+GLGFKTPREA+EGTYIDKKCP
Sbjct: 1 MAEQTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR-------FEKRHRNMSVHLS 336
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R +EKRH N+ H+S
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNLVAGYEKRHSNIPAHIS 120
Query: 337 PCFRDVEIGDIVTIGECRPLSKTVRFNVL 423
PCFR V+ GD V IG+CRPLSKTVRFNVL
Sbjct: 121 PCFR-VKEGDHVIIGQCRPLSKTVRFNVL 148
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 179 bits (435), Expect = 1e-45
Identities = 92/151 (60%), Positives = 110/151 (72%), Gaps = 14/151 (9%)
Frame = +1
Query: 13 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHSKNVGLGFKTPREAVEGTYIDKKCP 177
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREA+EGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVH 330
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAH 120
Query: 331 LSPCFRDVEIGDIVTIGECRPLSKTVRFNVL 423
+SPCFR V+ GD V IG+CRPLSKTVRFNVL
Sbjct: 121 VSPCFR-VKEGDHVIIGQCRPLSKTVRFNVL 150
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 179 bits (435), Expect = 1e-45
Identities = 92/151 (60%), Positives = 110/151 (72%), Gaps = 14/151 (9%)
Frame = +1
Query: 13 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHSKNVGLGFKTPREAVEGTYIDKKCP 177
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREA+EGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN---------RFEKRHRNMSVH 330
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R+EKRH N+ H
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQGANLPPCRYEKRHSNIPAH 120
Query: 331 LSPCFRDVEIGDIVTIGECRPLSKTVRFNVL 423
+SPCFR V+ GD V IG+CRPLSKTVRFNVL
Sbjct: 121 VSPCFR-VKEGDHVIIGQCRPLSKTVRFNVL 150
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 172 bits (419), Expect = 1e-43
Identities = 81/131 (61%), Positives = 98/131 (74%), Gaps = 4/131 (3%)
Frame = +1
Query: 43 KQATVFLNRKGGMKRKD----MRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGRI 210
+Q F +K G +K R KN+GLGFKTPREA+EGTYIDKKCPFTG VSIRGRI
Sbjct: 3 EQVLDFSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI 62
Query: 211 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 390
+ G KM RTI++RR+YLH++ KY R+EKRH N+ H+SPCFR V+ GD V IG+CR
Sbjct: 63 IAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCR 121
Query: 391 PLSKTVRFNVL 423
PLSKTVRFNV+
Sbjct: 122 PLSKTVRFNVI 132
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 167 bits (405), Expect = 6e-42
Identities = 92/166 (55%), Positives = 110/166 (66%), Gaps = 29/166 (17%)
Frame = +1
Query: 13 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHSKNVGLGFKTPREAVEGTYIDKKCP 177
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREA+EGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYN--------------------- 294
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCFFSFFFPISD 120
Query: 295 ---RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVL 423
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFNVL
Sbjct: 121 LGCRYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVL 165
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 128 bits (308), Expect = 3e-30
Identities = 62/100 (62%), Positives = 75/100 (75%), Gaps = 5/100 (5%)
Frame = +1
Query: 13 MADQTEKAFQKQATVFLN-RKGGMKRKD----MRHSKNVGLGFKTPREAVEGTYIDKKCP 177
MA+QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREA+EGTYIDKKCP
Sbjct: 1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
Query: 178 FTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNR 297
FTG VSIRGRI+ G KM RTI++RR+YLH++ KY R
Sbjct: 61 FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQR 100
>08_02_0383 - 16539472-16539633,16543044-16543205
Length = 107
Score = 43.6 bits (98), Expect = 9e-05
Identities = 24/64 (37%), Positives = 33/64 (51%)
Frame = +1
Query: 211 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 390
+ G+V KMQ+++V+ D L + YNR+ KR H D IGD V + R
Sbjct: 4 VVGIVVSNKMQKSVVVAVDRLFHHKMYNRYVKRTSKFMAHDET--EDCNIGDRVKLDPSR 61
Query: 391 PLSK 402
PLSK
Sbjct: 62 PLSK 65
>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
35406487-35406564,35406638-35406718,35407300-35407350,
35407788-35407933,35408169-35408235,35408328-35408387,
35408472-35408501,35408776-35408835,35408936-35409052,
35409790-35409903,35410068-35410166,35410572-35410697,
35410774-35410848,35410958-35411029,35411167-35411277,
35411760-35411843,35413149-35413256,35414207-35414308,
35414393-35414455,35414524-35414598,35414901-35414972,
35415063-35415187,35415251-35415302,35415380-35415448,
35415525-35415540,35415941-35415989,35416607-35417180
Length = 1077
Score = 36.7 bits (81), Expect = 0.011
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +1
Query: 211 LTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECR 390
LTG V K +T+ + L PKY R E+ + H P ++GD+V + R
Sbjct: 972 LTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAH-DPD-NQFKVGDVVELRRSR 1029
Query: 391 PLSKTVRF 414
P+SKT F
Sbjct: 1030 PISKTKHF 1037
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 64 NRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGR 207
N G ++RH+ ++G E T +DK+ P +G S+ GR
Sbjct: 117 NLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGR 164
>03_05_0248 +
22348504-22348568,22349064-22349371,22349476-22350039,
22350082-22350128,22351244-22351715,22352349-22352611
Length = 572
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 145 VEGTYIDKKCPFTGNVSIRGRILTGVVQKM-KMQRTIVIRRDYLHYLPKY 291
V GT PFTG++S G + + KM + +V +DYLH K+
Sbjct: 461 VRGTEDAPITPFTGDMSQSGDAIVAALMKMLAINPHLVTDKDYLHTAMKH 510
>01_05_0586 + 23443371-23444645
Length = 424
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 257 SGAIISITCLNTTDLRSDTGTCLFIYRLASGTWKS 361
+GA S TCLN T+ S G Y ++ G W S
Sbjct: 35 TGASFSRTCLNLTNAVSGIGVLSMPYAVSQGGWLS 69
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 223 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 357
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1251 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1295
>11_06_0185 + 21018045-21022307
Length = 1420
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 223 VQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVE 357
++KM + T + +H LPK+ E + LS CF +VE
Sbjct: 1249 LEKMVLSSTCIESISGVHGLPKFEELELNSSSCGRLLSSCFYNVE 1293
>03_06_0410 -
33728507-33729415,33729511-33729654,33730054-33730920,
33731371-33731913
Length = 820
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 216 CQDTASDGHVTREWTFLINVCAFNGLTGCLET*TNILRMSHILPFHAPLAIE 61
C + + HV W+ + CAF GL E R I+PFHAP + +
Sbjct: 357 CLNYLTSPHVVI-WSAVTASCAFPGLFEAQELMAKN-RFGEIVPFHAPFSTD 406
>01_05_0509 + 22811184-22812038,22813493-22814020
Length = 460
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 254 LSGAIISITCLNTTDLRSDTGTCLFIYRLASGTWKSETSSQLASA 388
++GA +CLN +++ S G Y L+ G W S T + A
Sbjct: 65 MTGASFGRSCLNLSNIISGIGMLSVPYALSQGGWLSLTLFTMVGA 109
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 207 YPDRRCSENENAANNCYQARLSPLPA*IQQI*EATQEHVCSSIAL 341
Y DRR ++E A Y+A+LS + Q + E T + +S A+
Sbjct: 205 YLDRRPDQSEVVATQDYEAQLSQISEMGQSVAEGTSDDPSASAAV 249
>04_03_0631 - 18190195-18190686,18190866-18191066
Length = 230
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 296 DLRSDTGTCLFIYR-LASGTWKSETSSQLASA 388
D +S TGTC F+ R L S ++K + S L++A
Sbjct: 87 DRKSTTGTCQFLGRSLVSWSFKKQNSIALSTA 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,670,460
Number of Sequences: 37544
Number of extensions: 301845
Number of successful extensions: 759
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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