Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I22
(527 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 337 7e-94
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 152 3e-38
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 152 3e-38
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 151 5e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 151 5e-38
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 95 6e-21
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 44 1e-05
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 42 6e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 42 8e-05
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 1.7
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 2.3
SPBC146.08c |||translation initiation factor eIF1A-like|Schizosa... 27 2.3
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 26 3.0
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa... 25 5.3
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 25 7.0
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 9.2
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 9.2
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 337 bits (828), Expect = 7e-94
Identities = 165/172 (95%), Positives = 170/172 (98%)
Frame = +1
Query: 10 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 189
RLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRT
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT 131
Query: 190 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 369
LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPD
Sbjct: 132 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 191
Query: 370 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGQTITL 525
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG+TITL
Sbjct: 192 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL 243
Score = 337 bits (828), Expect = 7e-94
Identities = 165/172 (95%), Positives = 170/172 (98%)
Frame = +1
Query: 10 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 189
RLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRT
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT 207
Query: 190 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 369
LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPD
Sbjct: 208 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 267
Query: 370 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGQTITL 525
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG+TITL
Sbjct: 268 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL 319
Score = 326 bits (802), Expect = 9e-91
Identities = 160/167 (95%), Positives = 165/167 (98%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 205 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 384
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLI
Sbjct: 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI 120
Query: 385 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGQTITL 525
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG+TITL
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL 167
Score = 310 bits (762), Expect = 7e-86
Identities = 151/158 (95%), Positives = 156/158 (98%)
Frame = +1
Query: 10 RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 189
RLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRT
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT 283
Query: 190 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 369
LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPD
Sbjct: 284 LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD 343
Query: 370 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 483
QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 344 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGL 381
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 152 bits (369), Expect = 3e-38
Identities = 76/88 (86%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 205 IQKESTLHLVLRLRGG-MQIFVKTLTGK 285
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 152 bits (368), Expect = 4e-38
Identities = 73/77 (94%), Positives = 76/77 (98%)
Frame = +1
Query: 253 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 432
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 433 IQKESTLHLVLRLRGGM 483
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 31.5 bits (68), Expect = 0.080
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +1
Query: 481 MQIFVKTLTGQTITL 525
MQIFVKTLTG+TITL
Sbjct: 1 MQIFVKTLTGKTITL 15
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 152 bits (369), Expect = 3e-38
Identities = 76/88 (86%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 205 IQKESTLHLVLRLRGG-MQIFVKTLTGK 285
IQKESTLHLVLRLRGG ++ +K L K
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASK 88
Score = 152 bits (368), Expect = 4e-38
Identities = 73/77 (94%), Positives = 76/77 (98%)
Frame = +1
Query: 253 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 432
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 433 IQKESTLHLVLRLRGGM 483
IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGI 77
Score = 31.5 bits (68), Expect = 0.080
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +1
Query: 481 MQIFVKTLTGQTITL 525
MQIFVKTLTG+TITL
Sbjct: 1 MQIFVKTLTGKTITL 15
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 151 bits (367), Expect = 5e-38
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 205 IQKESTLHLVLRLRGG 252
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 151 bits (367), Expect = 5e-38
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = +1
Query: 253 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 432
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 433 IQKESTLHLVLRLRGG 480
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 31.5 bits (68), Expect = 0.080
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +1
Query: 481 MQIFVKTLTGQTITL 525
MQIFVKTLTG+TITL
Sbjct: 1 MQIFVKTLTGKTITL 15
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 151 bits (367), Expect = 5e-38
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 205 IQKESTLHLVLRLRGG 252
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 151 bits (367), Expect = 5e-38
Identities = 73/76 (96%), Positives = 75/76 (98%)
Frame = +1
Query: 253 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 432
MQIFVKTLTGKTITLEVE SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 433 IQKESTLHLVLRLRGG 480
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 31.5 bits (68), Expect = 0.080
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +1
Query: 481 MQIFVKTLTGQTITL 525
MQIFVKTLTG+TITL
Sbjct: 1 MQIFVKTLTGKTITL 15
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 95.1 bits (226), Expect = 6e-21
Identities = 41/76 (53%), Positives = 57/76 (75%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
M I VKTLTGK I L+++P+D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 205 IQKESTLHLVLRLRGG 252
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
Score = 95.1 bits (226), Expect = 6e-21
Identities = 41/76 (53%), Positives = 57/76 (75%)
Frame = +1
Query: 253 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 432
M I VKTLTGK I L+++P+D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 433 IQKESTLHLVLRLRGG 480
++ S LHLVL LRGG
Sbjct: 61 LEGGSVLHLVLALRGG 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 44.0 bits (99), Expect = 1e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +1
Query: 52 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 225
GK LE+EP++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
Score = 44.0 bits (99), Expect = 1e-05
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +1
Query: 280 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 453
GK LE+EP++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 41.9 bits (94), Expect = 6e-05
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 201
M + K L + + +DT I +K KIQ ++ ++Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 202 NIQKE 216
NI+++
Sbjct: 61 NIKEQ 65
Score = 41.9 bits (94), Expect = 6e-05
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 253 MQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 429
M + K L + + +DT I +K KIQ ++ ++Q+LI++G+ L D +T+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 430 NIQKE 444
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 41.5 bits (93), Expect = 8e-05
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +1
Query: 25 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 204
+ + +K + + V+ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 205 IQKESTLHLVLRL 243
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
Score = 41.5 bits (93), Expect = 8e-05
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +1
Query: 253 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 432
+ + +K + + V+ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 433 IQKESTLHLVLRL 471
IQ ++HLV L
Sbjct: 64 IQDGHSIHLVKTL 76
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 199 SQKECVHPQVVFQQKSVSA-GQEGCLLCLGSWLLHSRWCLMAR 74
S + C+ + + +Q ++ G C CL +WL HS C M +
Sbjct: 1088 SHQICIICRDIIKQGFITTCGHLYCSFCLEAWLKHSSSCPMCK 1130
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2
Query: 400 VVFQQKSVSAGQEECLLCLGSWLXHSRWCLM 308
++ Q + G C CL +WL HS C M
Sbjct: 1098 IIKQGFITTCGHLYCSFCLEAWLKHSSSCPM 1128
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 2.3
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +1
Query: 28 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 201
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 202 NIQKESTLHLVLRLRGGMQIFVKTLTGKTI 291
+ T HLV+ + + + T ++
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTLPSATSSSV 94
Score = 26.6 bits (56), Expect = 2.3
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +1
Query: 256 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD--Y 429
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
Query: 430 NIQKESTLHLVLRLRGGMQIFVKTLTGQTI 519
+ T HLV+ + + + T ++
Sbjct: 65 DATDLVTFHLVIAVFNSTSTTLPSATSSSV 94
>SPBC146.08c |||translation initiation factor
eIF1A-like|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 26.6 bits (56), Expect = 2.3
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = -3
Query: 465 KDQVESRFFLNIVIRKGPAIFKLFSSKNQSLLVR-----RNAFFVLDLGFXILD 319
KDQV ++ +V KG A+F + + Q LLV RN +V GF I+D
Sbjct: 19 KDQVVAK----VVQLKGSALFMVVENNGQELLVEMPPKYRNKIWVRRNGFVIVD 68
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 406 DGRTLSDYNIQKESTLHLVLRLR-GGMQIFVKTLTGQTITL 525
DG TL++ N HL++RL+ ++ + QT+TL
Sbjct: 432 DGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQSQTLTL 472
Score = 24.6 bits (51), Expect = 9.2
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 178 DGRTLSDYNIQKESTLHLVLRLR-GGMQIFVKTLTGKTITL 297
DG TL++ N HL++RL+ ++ + +T+TL
Sbjct: 432 DGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQSQTLTL 472
>SPAC31G5.18c |||ubiquitin family, human C1ORF55
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 495 HEYLHSTSQTKDQVESRFFLNIVIRKGPAIFKLFSS 388
HEYL Q+ V F +++ R+G FSS
Sbjct: 167 HEYLEDLEQSVSNVRDAFQNSLLYRRGSTSASSFSS 202
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 7.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 204 HSEGIYSSLGPSSERWNANICEDPHWQDYHP*GRAIRHHRECXSQD 341
H EG+Y L +R N + E+P HP + + + E S++
Sbjct: 82 HIEGVYEMLKSRHDRQNEPVIEEP---SSHPKNQKNQENNEPTSEE 124
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 24.6 bits (51), Expect = 9.2
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -1
Query: 179 SSSCFPAKISLCWSGGMPSLSWILAFTFSMVSDGSTSRVIVLPVRVFTNICIP 21
++S P+ S + G P + S++S S S VLP + T+ P
Sbjct: 204 NTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTSIITSTSTP 256
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 34 FVKTLTGKTITLEVEPSDTIE--NVKAKIQDKEG 129
F LT T T+E EP+ TI+ ++A++ +K G
Sbjct: 22 FEDALTFITKTIEQEPNPTIDLFELRAQVYEKSG 55
Score = 24.6 bits (51), Expect = 9.2
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 262 FVKTLTGKTITLEVEPSDTIE--NVKAKIQDKEG 357
F LT T T+E EP+ TI+ ++A++ +K G
Sbjct: 22 FEDALTFITKTIEQEPNPTIDLFELRAQVYEKSG 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.137 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,115
Number of Sequences: 5004
Number of extensions: 48859
Number of successful extensions: 178
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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