Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I21
(594 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 29 0.39
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 29 0.51
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 2.1
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar... 27 2.1
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 2.7
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 26 3.6
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 26 3.6
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 26 4.8
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p... 26 4.8
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 26 4.8
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 26 4.8
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 6.3
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 8.3
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.3
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 25 8.3
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.3
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 29.5 bits (63), Expect = 0.39
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 368 HDIKMRERMVRVWTNFAKSGNPTPDTNHQLPIAWLPASKDEEY 496
H + + + +V+ W N A SGN D Q W+ +SK Y
Sbjct: 1752 HSLPVLKALVKTWWNEAASGNNLADLIIQHLARWISSSKSYLY 1794
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 29.1 bits (62), Expect = 0.51
Identities = 21/78 (26%), Positives = 34/78 (43%)
Frame = +2
Query: 323 YLFKNDFQKDVEPTPHDIKMRERMVRVWTNFAKSGNPTPDTNHQLPIAWLPASKDEEYYL 502
YLF+ +++K + RE++ W +AK P P ++ WL AS D
Sbjct: 101 YLFE-EYKKQQGTNKSHSEAREKVTEAWFAYAKKNLPEPPSSMSEWPQWL-ASHDIPTLA 158
Query: 503 NLGPELTLLSDPDKEKMD 556
P+L + D K +D
Sbjct: 159 INNPKLPMHVDALKSALD 176
>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 199
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 452 QLPIAWLPASKDEEYYLNLGPELTLLSDPDKEKMDFWDDVYNKYFRI 592
QL W P ++ + L ++ D + + WDD+YN Y +I
Sbjct: 104 QLQTPWSPEARLQAVKLAYQKTGRIVYDAPLQNIHNWDDLYNYYDKI 150
>SPAC4A8.13c |pts1||20S proteasome component beta
5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 260 SNHNDMFTLGYKNAGHSDELGYLFKNDFQKD 352
+ H D ++ G N H DE G++F +F D
Sbjct: 224 ATHRDAYSGGSVNLYHIDENGWVFHGNFDVD 254
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 189 LIYLCVSILKNLSEKSWKYSCKLSGSVGCLPLKYRLFIF 73
L+ +SI L+ SW +S K + LPL Y + +F
Sbjct: 128 LLLRLISIYDFLTYSSWSFSVKGGSFLLLLPLAYNITLF 166
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Frame = +2
Query: 515 ELTLLSDPD--KEKMDFWDDVY 574
+L + D D EK+ FWDDVY
Sbjct: 165 QLAAIEDADYKSEKIGFWDDVY 186
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +3
Query: 102 NNLQTPRVCRNISSFSPT-DSLISTRTDI--LNIWSKSPTDRFTSTSLITL 245
+++ TP VC ++ +F+PT D L +T D +++W+ + ST + L
Sbjct: 608 DSISTPSVCTSL-TFAPTGDYLATTHVDQVGISLWTNLSMFKHVSTKALRL 657
>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 491 EYYLNLGPELTLLSDPDKEKMDFWDDVYNKY 583
EY +N+G TLL P+K + D Y Y
Sbjct: 240 EYTINIGVAPTLLFPPEKAGFSSFRDFYPTY 270
>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 179 RYIKYLVQVTNRPIYFYKFDY 241
RY+K+L V N Y YKF +
Sbjct: 191 RYLKHLKSVPNVSYYIYKFPF 211
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 386 ERMVRVWTNFAKSG--NPTPDTNHQLPIAWLPASKD 487
++ VR+W F++SG P P + L +A+ P K+
Sbjct: 488 DKTVRIWDIFSRSGIVEPLPIPSDVLSLAFHPDGKE 523
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +2
Query: 26 ELNVQKDSAESLAIAEKIKSLYFKGKQPTDPESLQEY----FQLFSDRFFNIDTHRY 184
E QK S L + +K+K Y K P+ L + QL ++ F+I H +
Sbjct: 632 ECRWQKVSLSELVLPKKVKIAYMKAVSRVHPDKLPQQTSVEHQLIAESAFSILNHAW 688
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 341 FQKDVEPTPHDIKMRERMVRVWTNFAKSGNPTPDTNHQLPIAWLPASKD 487
F + + T H +RE M + + G P + N P +W+P K+
Sbjct: 78 FSRMLGSTSHIFGIREDMDNESSEEERDGIPRVEGNAADPFSWIPDGKN 126
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 308 SDELGYLFKNDFQKDVEPTPHDIKMR 385
SDEL Y+ K QKD E +I++R
Sbjct: 677 SDELTYITKKFVQKDQEYQTKEIELR 702
>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 437 PDTNHQLPIAWLPASKDEEYYLNLGPEL 520
PDTN+ P A L ++ + Y L PEL
Sbjct: 128 PDTNNSRPFANLESTTVPKRYFYLHPEL 155
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -3
Query: 433 WISRLGEVGPNSHHSLPHLDIVWRRFD 353
W+S+ + N S HL +W FD
Sbjct: 292 WLSQSVDADMNPVFSFEHLSFIWNYFD 318
>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 114 TPRVCRNISSFSPTDSLISTRTDILNIWSKSPT 212
+P + I S S +R I+N+W++SPT
Sbjct: 41 SPFTLKPIKSTSDRKRRRHSRMSIVNVWNQSPT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,772,327
Number of Sequences: 5004
Number of extensions: 64297
Number of successful extensions: 244
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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