Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I21
         (594 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0146 + 28018236-28018580,28018670-28018777,28018984-280191...    31   0.52 
09_03_0056 - 11936264-11939677                                         29   2.8  
03_05_0174 + 21509202-21509690,21509696-21510133,21510176-21510643     29   2.8  
03_05_0927 - 28874819-28877098,28877689-28877691                       28   4.9  
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    28   6.5  
06_01_0394 - 2835438-2835896,2836664-2836913,2837197-2837669,283...    28   6.5  
01_06_0003 - 25495812-25495953,25496062-25496129,25496961-254970...    28   6.5  
12_02_0946 + 24675334-24676338,24676537-24676757,24678253-246783...    27   8.5  

>05_07_0146 +
           28018236-28018580,28018670-28018777,28018984-28019148,
           28019269-28019736,28019823-28019936,28020038-28020715
          Length = 625

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 431 PTPDTNHQLPIAWLPASKDEEYYLNLGPE 517
           P P    QLP +WLPA K   +    GPE
Sbjct: 311 PPPQQQQQLPPSWLPADKVPRFLPGKGPE 339


>09_03_0056 - 11936264-11939677
          Length = 1137

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +2

Query: 26  ELNVQKDSAESLAIAEKIKS---LYFKGKQPTDPESLQEYFQLFSDRFFNIDT 175
           E  V KDS++ L I  K++    L+F G   +D ESL +Y  L S    +ID+
Sbjct: 654 ECFVIKDSSDLLRIPPKVRHVSILHFSGLSSSDLESLHKYKTLRSVVCISIDS 706


>03_05_0174 + 21509202-21509690,21509696-21510133,21510176-21510643
          Length = 464

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +1

Query: 355 RTDATRYQDEGENGASLDQLRQVWKSNTRHQSSATNRLAAGLKGRRVLSQPRPGTDTIIR 534
           +T+ T   ++G +G   D     W+       +    +A   + R    QP P TD ++ 
Sbjct: 288 QTEGTELSEQGSSGVIDDDY---WREADATGGAEREEIALLDEERCPQPQPAPPTDALVP 344

Query: 535 PGQGEN 552
           P QG+N
Sbjct: 345 PLQGQN 350


>03_05_0927 - 28874819-28877098,28877689-28877691
          Length = 760

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 427 SRLGEVGPNSHHSLPHLDIVWRRFDVLLEIIFEQVS 320
           S + ++ P +HH     DI+ R  D+L +I F  VS
Sbjct: 439 SAIAKIFPQTHHLYFTADILKRSKDILADIYFRHVS 474


>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
            15222420-15226194
          Length = 2502

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 378  LISCG-VGSTSFWKSFLNKYPSSSECPAFL 292
            ++ CG +G T+  K F NK+    +C AF+
Sbjct: 1171 IVGCGGIGKTTLAKLFYNKFGGRFDCRAFI 1200


>06_01_0394 -
           2835438-2835896,2836664-2836913,2837197-2837669,
           2838941-2840608
          Length = 949

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 422 TW-RSWSKLAPFSPSS*YRVASVRRPSG 342
           TW RSW  L PFSP+    +A+VR  +G
Sbjct: 596 TWDRSWIFLRPFSPAMWLLIAAVRLYNG 623


>01_06_0003 -
           25495812-25495953,25496062-25496129,25496961-25497050,
           25497201-25497611,25497721-25498023
          Length = 337

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 208 GDLDQIFNISVRVDIKESVGEK 143
           G+ D IFNI + + +KE +GEK
Sbjct: 275 GENDNIFNIELAMTMKEQLGEK 296


>12_02_0946 +
           24675334-24676338,24676537-24676757,24678253-24678307,
           24678446-24678571
          Length = 468

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 369 CGVGSTSFWKSFLNKYPSSSECPAFLY 289
           CG GS   WK+F   Y   S  P++L+
Sbjct: 377 CGGGSCMLWKAFFGHYFIPSWFPSYLH 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,652,619
Number of Sequences: 37544
Number of extensions: 406942
Number of successful extensions: 1139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)