Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I20
(433 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 30 0.17
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 27 1.6
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 27 1.6
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com... 26 2.2
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 25 3.8
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 25 6.6
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 6.6
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 25 6.6
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 24 8.7
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c... 24 8.7
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 29.9 bits (64), Expect = 0.17
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +3
Query: 87 NTFTVSPCQSHISQKHGTQRLKQNIHAVISWLSVKHYLVRTLKQM 221
N+F + S+I H + + +IHA+IS ++V+ YL L++M
Sbjct: 127 NSFVLMQTVSNIVNLHRLKSMDSDIHALIS-MAVRDYLANLLQKM 170
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 26.6 bits (56), Expect = 1.6
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 365 GSGPVHLIGHHLLGALV 415
GSGPV L+G H+LG ++
Sbjct: 178 GSGPVLLLGSHILGNIM 194
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 1.6
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +2
Query: 125 SETWDPEAKAEYPRSN----KLVIRQALLGPDAKADELNVVQVETMSLQESVKIPVAVLK 292
SE + A +P +N + + LL K + N ++ +++K + VL+
Sbjct: 265 SEGFHHRASRYWPITNLDSFSTISEKELLNYSKKQELTNFIENSIRKKIQTIKNLIPVLQ 324
Query: 293 AGETRHARLDFEFPDA 340
+ HAR+DF+ D+
Sbjct: 325 EMDKEHARIDFDNVDS 340
>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
complex anchor subunit Tim18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 26.2 bits (55), Expect = 2.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 337 CTCHIHSYTGFRTCAFDWSPS 399
CT H++ GF +C D+ P+
Sbjct: 121 CTLITHAHLGFESCVIDYFPA 141
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 3.8
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +2
Query: 224 LNVVQVETMSLQESVKIPVA---VLKAGETRHARLDFEFPDAPVIFTLIQGSG 373
LN +Q T+SL+ S++I V+ H R++ F + + L++G+G
Sbjct: 556 LNEIQKSTLSLK-SLQIGTILQEVMTMAREHHVRIEANFANTVLSILLVEGAG 607
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 24.6 bits (51), Expect = 6.6
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 125 SETW--DPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQV 241
SE W + AE KL+ Q L+G DAK D L ++ V
Sbjct: 540 SENWVYSEQQLAEVRNMEKLLDAQ-LMGGDAKVDRLRLLMV 579
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 24.6 bits (51), Expect = 6.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 326 EFPDAPVIFTLIQGSGPVHLIGHHLL 403
EFPD P F ++ + P + H L+
Sbjct: 38 EFPDGPATFVRLKCTNPESKVPHFLM 63
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 24.6 bits (51), Expect = 6.6
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -2
Query: 357 RVNMTGASGNSKSKRACLVSPAFNTAT---GIFTDSC 256
++N A NSK+K++ ++ TAT G DSC
Sbjct: 695 KLNKAAAVENSKAKKSVVIKKVSGTATLNLGNVKDSC 731
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 24.2 bits (50), Expect = 8.7
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 417 STSAPSRW*PIKCTGPEPCIRVNMTGASGNSKSKRACLVSPA-FNTATGIFTDS 259
+TS+P P++ P +R +MTG +S A L P+ + + ++T+S
Sbjct: 278 TTSSPFFTAPVEPNQPLQPLRPSMTGPVPSSMGSEATLNMPSTYGIDSNLYTNS 331
>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 429
Score = 24.2 bits (50), Expect = 8.7
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 33 HVNVSQNLNKLVKSP*RTNTFTVSPCQSHISQKHGTQRLKQNIHAVISW 179
HV + L K ++ + N + +SH+S K + LK AV+S+
Sbjct: 300 HVQNAFALAKYLEKHPKVNWVSYPGLESHVSHKLAKKYLKNGYGAVLSF 348
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,978
Number of Sequences: 5004
Number of extensions: 29759
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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