Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I20
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   3.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   4.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 348 MTGASGNSKSKRACLVSPAFNTATG--IFTDSCNDIV 244
           +TG  GN  +    + +PA  TAT   +F+ + +D++
Sbjct: 52  VTGIFGNITTCTVIIKNPAMQTATNYYLFSLAISDLI 88



 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 85  RILLRCHPVRVTSVRNM 135
           R L  CHP+RV ++  +
Sbjct: 139 RYLAICHPLRVYTISGL 155


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 209 RPDQVVLDG*PAYYCVDILL*PLGPMFLTDVT 114
           RPD     G PA   VDI++  +GP+   D+T
Sbjct: 22  RPD---FGGPPATVEVDIMVRSMGPISEVDMT 50


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 359 IQGSGPVHLIG 391
           I GSG VHL+G
Sbjct: 181 IAGSGAVHLVG 191


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +3

Query: 39  NVSQNLNKLVKSP 77
           N++Q L+KL++SP
Sbjct: 887 NLTQTLDKLIRSP 899


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
 Frame = -2

Query: 387 IKCT--GPEPCIRVNMTGASGNSKSK 316
           + CT  GP PC      G +   + K
Sbjct: 425 VTCTNCGPNPCTHTTTNGCTAELRKK 450


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
 Frame = -2

Query: 387 IKCT--GPEPCIRVNMTGASGNSKSK 316
           + CT  GP PC      G +   + K
Sbjct: 411 VTCTNCGPNPCTHTTTNGCTAELRKK 436


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
 Frame = -2

Query: 387 IKCT--GPEPCIRVNMTGASGNSKSK 316
           + CT  GP PC      G +   + K
Sbjct: 445 VTCTNCGPNPCTHTTTNGCTAELRKK 470


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
 Frame = -2

Query: 387 IKCT--GPEPCIRVNMTGASGNSKSK 316
           + CT  GP PC      G +   + K
Sbjct: 394 VTCTNCGPNPCTHTTTNGCTAELRKK 419


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 235 SGGDNVITGVGKNTSRSI 288
           +G   +ITGVGK TS ++
Sbjct: 822 TGKVEMITGVGKATSPNL 839


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -1

Query: 319 QACMSCLSCFQY 284
           Q C  C +C QY
Sbjct: 604 QCCWHCFNCTQY 615


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,266
Number of Sequences: 438
Number of extensions: 2261
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)