Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I18
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         28   0.68 
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.3  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    24   8.4  

>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 27.9 bits (59), Expect = 0.68
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -2

Query: 307 CQFSIFLINLRFKKCINFIFKKSTKTRYDELKLIRYLYSQFNCVELMYI 161
           C FS  L  LR KK  N +     KT +D  + I +LYS   CV  ++I
Sbjct: 52  CNFSKSLFWLR-KKIKNSVL---LKTSFDSNETIFFLYSLHRCVYYLFI 96


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 57  NSHTVDKLIKLPPPFQSP 110
           N   ++K+ + PPPF+SP
Sbjct: 45  NRKILEKIAEKPPPFESP 62


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +3

Query: 12  LISHTSFNTFLAQTRNSHTVDKLIKLPPPFQSPYKFNRYAKDYFCESVIFIYINS 176
           +++ T +N  L    +   V KLI +        K NRY+ + F   + +I  N+
Sbjct: 129 VVADTPYNKLLCPLSSLEWVSKLILMDNANSIGMKNNRYSTNPFIYGMCYIIRNN 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,448,741
Number of Sequences: 5004
Number of extensions: 24969
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)