Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I18
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024798-4|AAK29922.1|  401|Caenorhabditis elegans Pip kinase pr...    28   3.1  
AF025471-10|AAB71059.1|  326|Caenorhabditis elegans Hypothetical...    27   5.5  
Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>AC024798-4|AAK29922.1|  401|Caenorhabditis elegans Pip kinase
           protein 2 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 60  SHTVDKLIKLPPP-FQSPYKFNRYAK 134
           +HTVD+L+ +PPP    P  F  Y+K
Sbjct: 40  NHTVDQLLHVPPPGLLMPDDFKAYSK 65


>AF025471-10|AAB71059.1|  326|Caenorhabditis elegans Hypothetical
           protein R52.1 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 292 FLINLRFKKCINFIFKKSTKTRYDELKLIR 203
           F + L  +KC  F+ +KS K+  ++LKL++
Sbjct: 225 FTMPLPIQKCEEFLIEKSEKSVKEKLKLVK 254


>Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical
           protein E02H4.4 protein.
          Length = 849

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +3

Query: 3   TRLLISHTSFNTFLAQTRNSHTVDKLIKLPPPFQSPYKFNRYAKDYFCESVIFIYINST 179
           T+LL + +S    L++ R SH       +   +QS +   R+  +YF  S+ FI I +T
Sbjct: 603 TKLLEAPSSRQQQLSR-RVSHRTINQFSVDSGYQSLHSLERFVDNYFSFSLKFIQILAT 660


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,001,811
Number of Sequences: 27780
Number of extensions: 139319
Number of successful extensions: 323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)