Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I17
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   1.1  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    27   1.4  
SPBC1709.10c |||metallochaperone |Schizosaccharomyces pombe|chr ...    27   1.8  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   5.6  
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    25   7.4  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    25   7.4  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    24   9.8  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    24   9.8  
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    24   9.8  

>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 169 SVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAPKEEPQ 312
           SV +P+ D + DDSE+ E  T+   + E  A+  A+     A  EEP+
Sbjct: 382 SVDEPQKDSK-DDSEKVEKETEVERKEENEAEAEAVFDDWEAALEEPE 428


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +3

Query: 234 RSLRNRSYCRHFSHHSKTNCT----ERRTTEGRLHWCTNMEGIYKVV 362
           R  R RS    FSHHS+T+ +      R++ G L     + GIY  V
Sbjct: 167 RERRERSISPSFSHHSRTSISGQSHSSRSSRGPLLNAPTLYGIYSGV 213


>SPBC1709.10c |||metallochaperone |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 68

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -3

Query: 170 EFRFGHSCPGCSSLMSGVHRTVVIANNSTTVPRKDPMATDDCDGELVARS 21
           +F    +C GC + +  V   + + + S +V +++ + T D   ELV ++
Sbjct: 4   QFNVAMACDGCKNAIDRVLTRLGVEDKSISVEKQEVIVTTDKPYELVEQT 53


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 137 SSLMSGVHRTVVIANNSTTVPRKDPMATDDCDGELVARS 21
           SS  +GV+  V +++ S ++P KD +     D   VAR+
Sbjct: 391 SSADNGVYELVNVSSRSNSLPLKDNIKGPGDDAIFVARN 429


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 151 EWPKRNSVQQPKPDVRLDDSE 213
           +W KRN ++ P+ D+ +  SE
Sbjct: 42  QWAKRNDLENPEDDIIVFSSE 62


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -1

Query: 100 LLTIAQPFHGRTPWLLMTVMANSLPAP 20
           L+ +    H R  W++   +ANS+  P
Sbjct: 122 LIDLITDMHNRDMWIMFDALANSMAIP 148


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 17/84 (20%), Positives = 34/84 (40%)
 Frame = +1

Query: 31  TSSPSQSSVAMGSFRGXXXXXXXXXXXXXXPLINELQPGQEWPKRNSVQQPKPDVRLDDS 210
           +++P +++V   + R               PLI+       + KR   +  +P +RLD +
Sbjct: 347 SNTPPRNTVTPSTARSSTLSQNPSSSSNSIPLISRNLRDFSFFKRCLEEDIEPTLRLDHA 406

Query: 211 EREEFSTDDPLETEVTADTLAITP 282
               + T   + T +   +L I P
Sbjct: 407 SGLSWLTRRSVFTAILESSLIINP 430


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +1

Query: 157 PKRNSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPK 285
           PK+   ++P P  R  D ++ +  +++ +E +V   T+    K
Sbjct: 150 PKKPEAKEPSPKSRKTDEDKHDKDSNEKIE-DVNEKTIKFADK 191


>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 226 STDDPLETEVTADT 267
           +T  PLETEV ADT
Sbjct: 18  ATSTPLETEVVADT 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.130    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,279
Number of Sequences: 5004
Number of extensions: 35984
Number of successful extensions: 69
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)