Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I17
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1067 - 25792295-25793167                                         32   0.26 
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873...    29   1.4  
11_04_0358 + 16725417-16725422,16725789-16725858,16727825-167286...    28   4.2  
03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467     27   5.6  
02_05_0960 + 33097510-33097821,33098846-33099043,33099174-330994...    27   7.3  
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427...    27   7.3  

>12_02_1067 - 25792295-25793167
          Length = 290

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 173 TEFRFGHSCPGCSSL-MSGVHRTVVIANNSTTVPRKDPMATDDC 45
           T  R G  CPG SSL M+G  R V  A  + ++PR   +  D C
Sbjct: 172 TAARVGAGCPGFSSLKMAGAIRDVDAAAMAASLPRLKRLCLDGC 215


>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
            23187887-23188159,23188275-23188338,23188479-23188744,
            23188951-23189045,23189544-23189718,23190669-23191063,
            23191830-23191953,23192864-23192959,23193049-23193120,
            23194687-23194824,23195369-23195549,23195602-23195963,
            23196944-23197386,23197461-23197763,23197857-23198081,
            23198260-23198350,23198702-23198779,23198939-23199229,
            23199316-23199513,23199681-23200163,23200488-23200562,
            23201163-23201324,23201400-23201729,23201816-23201916,
            23202477-23202581,23202931-23203162,23203913-23204257,
            23204346-23204447,23206010-23206153,23206463-23206551,
            23206979-23207061,23207172-23207287,23207824-23207909,
            23208461-23208560,23209270-23209335
          Length = 2451

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 167  FRFGHSCPGCSSLMSGVHRTVVIANNSTTVPRKDPMATD 51
            FR GH    CS        T     + +++PR DP+ TD
Sbjct: 2086 FRHGHYAEACSLFFPSNQPTDEGETSLSSIPRNDPLTTD 2124


>11_04_0358 +
           16725417-16725422,16725789-16725858,16727825-16728693,
           16729109-16729198,16730071-16730356,16730573-16730592
          Length = 446

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 182 GCCTEFRFGHSCPGCSSLMSG 120
           GCCT   FG S PG ++ M+G
Sbjct: 408 GCCTNGAFGASSPGGNAEMNG 428


>03_04_0130 + 17543991-17545758,17545889-17545971,17546396-17546467
          Length = 640

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 160 KRNSVQQPKPDVRLDDSEREEFSTDDPLE 246
           K+    +PKP    DD E +E   DD LE
Sbjct: 134 KQKKAAEPKPPRDTDDDEDDEEEADDDLE 162


>02_05_0960 +
           33097510-33097821,33098846-33099043,33099174-33099446,
           33099575-33099677,33100297-33100415,33100968-33101759
          Length = 598

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 125 SGVHRTVVIANNSTTVPRKDPMATDDCDGELVARSA 18
           SGVH    + N +  VP     + DD   E+V R A
Sbjct: 306 SGVHFITTVINGADLVPTFSAASVDDLRSEVVMRRA 341


>01_01_0575 -
           4271910-4272371,4272923-4272928,4272999-4273174,
           4274150-4275299
          Length = 597

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = +1

Query: 130 NELQPGQEWPKRNSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAPKEEP 309
           NE++  +     N+    K +  +D+ E EE   +DP E    ++  A   ++   +E+P
Sbjct: 228 NEVEMTEAPLVENATATEKKEEHVDEEEEEE--EEDPEEMVPASEEEADAEEVEKEEEDP 285

Query: 310 QKVDYTGAQ 336
           ++V+  G +
Sbjct: 286 EEVEKEGGE 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.130    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,921,976
Number of Sequences: 37544
Number of extensions: 245597
Number of successful extensions: 559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)