Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I17
(463 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 29 5.9
AJ506489-1|CAD44724.1| 105|Homo sapiens immunoglobulin heavy ch... 29 5.9
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 29 5.9
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 29 5.9
AB016090-1|BAA83716.1| 802|Homo sapiens RNA binding protein pro... 29 5.9
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 29 5.9
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 29 5.9
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 29 5.9
EF120357-1|ABL98073.1| 619|Homo sapiens zinc finger and BTB dom... 29 7.8
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 121 PLINELQPGQEWPKRNSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAP 297
P + P ++ P R+S QPK + +R + P + VT+ T + ++P
Sbjct: 897 PRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSP 955
>AJ506489-1|CAD44724.1| 105|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 105
Score = 29.5 bits (63), Expect = 5.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 303 RTTEGRLHWCTNMEGIYKVVWYPCYYW 383
R+ + +++C + G Y WYP YY+
Sbjct: 74 RSEDTAVYYCASERGEYSSSWYPVYYY 100
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator subunit
SRm300 protein.
Length = 2296
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 121 PLINELQPGQEWPKRNSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAP 297
P + P ++ P R+S QPK + +R + P + VT+ T + ++P
Sbjct: 897 PRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSP 955
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
Length = 2752
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 121 PLINELQPGQEWPKRNSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAP 297
P + P ++ P R+S QPK + +R + P + VT+ T + ++P
Sbjct: 897 PRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSP 955
>AB016090-1|BAA83716.1| 802|Homo sapiens RNA binding protein
protein.
Length = 802
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 121 PLINELQPGQEWPKRNSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAP 297
P + P ++ P R+S QPK + +R + P + VT+ T + ++P
Sbjct: 23 PRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSP 81
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein protein.
Length = 956
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 121 PLINELQPGQEWPKRNSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAP 297
P + P ++ P R+S QPK + +R + P + VT+ T + ++P
Sbjct: 862 PRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSP 920
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 121 PLINELQPGQEWPKRNSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAP 297
P + P ++ P R+S QPK + +R + P + VT+ T + ++P
Sbjct: 687 PRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSP 745
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 29.5 bits (63), Expect = 5.9
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 121 PLINELQPGQEWPKRNSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAP 297
P + P ++ P R+S QPK + +R + P + VT+ T + ++P
Sbjct: 945 PRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPSRVTSRTTPRRSRSVSP 1003
>EF120357-1|ABL98073.1| 619|Homo sapiens zinc finger and BTB domain
containing 7C protein.
Length = 619
Score = 29.1 bits (62), Expect = 7.8
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +1
Query: 145 GQEWPKRNSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAI-TPKLIAPKEEPQKVD 321
G+E K + D D+ E EE DD +TE AD + P+ I+ + P K D
Sbjct: 134 GEEDDKEDDDDDEDDDDEEDEEEEEEEEEDDDDDTEDFADQENLPDPQDISCHQSPSKTD 193
Query: 322 Y 324
+
Sbjct: 194 H 194
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.313 0.130 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,666,225
Number of Sequences: 237096
Number of extensions: 1341479
Number of successful extensions: 2346
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2346
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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