Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I17
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom...    41   5e-04
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    28   3.7  
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    28   3.7  
AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.      28   3.7  
AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical ...    28   3.7  
AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical ...    28   3.7  
AF000261-11|AAB52931.1|  268|Caenorhabditis elegans Hypothetical...    27   4.9  
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    27   8.6  

>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform a protein.
          Length = 1273

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 124 LINELQPGQEWPKRNSVQQPKPDVRLDDSEREEFSTDDPLETEVTADTLAITPKLIAPKE 303
           L+  L P + WP   +++ PK +  LD S+  EF  +  +  +VT     +  K+ +P E
Sbjct: 674 LLCSLSPRRVWPADQNIEHPKAETLLDTSDPMEFKEEPVIRYDVTPKVEPVIEKIKSPVE 733

Query: 304 EP 309
            P
Sbjct: 734 SP 735


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 175  QQPKPDVRLDDSEREEFSTDDPLETEVTADTLA-ITPKLIAPKEEPQKVDYTGAQIWKVS 351
            Q  KPD +L          D+     VT   +A +   + APKE P +     A+ WK  
Sbjct: 1893 QGKKPDPQLTSPRDTRCMMDEGRRENVTIVPVASLIGAVEAPKEAPSQRAAEAAEDWKAY 1952

Query: 352  TKS 360
            TKS
Sbjct: 1953 TKS 1955


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 175  QQPKPDVRLDDSEREEFSTDDPLETEVTADTLA-ITPKLIAPKEEPQKVDYTGAQIWKVS 351
            Q  KPD +L          D+     VT   +A +   + APKE P +     A+ WK  
Sbjct: 1893 QGKKPDPQLTSPRDTRCMMDEGRRENVTIVPVASLIGAVEAPKEAPSQRAAEAAEDWKAY 1952

Query: 352  TKS 360
            TKS
Sbjct: 1953 TKS 1955


>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 164  RFGHSCPGCSSLMSGVHRTVVIANNSTTVPRKDPMATDDC 45
            +F     GC +L S  +  +V++ NST +   +  + DDC
Sbjct: 2200 KFTQCDAGCQTLNSADYDGIVVSANSTVIVGVNATSRDDC 2239


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 164  RFGHSCPGCSSLMSGVHRTVVIANNSTTVPRKDPMATDDC 45
            +F     GC +L S  +  +V++ NST +   +  + DDC
Sbjct: 2200 KFTQCDAGCQTLNSADYDGIVVSANSTVIVGVNATSRDDC 2239


>Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical
           protein W02B9.1a protein.
          Length = 1223

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 164 RFGHSCPGCSSLMSGVHRTVVIANNSTTVPRKDPMATDDC 45
           +F     GC +L S  +  +V++ NST +   +  + DDC
Sbjct: 503 KFTQCDAGCQTLNSADYDGIVVSANSTVIVGVNATSRDDC 542


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
            protein W02B9.1b protein.
          Length = 2920

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 164  RFGHSCPGCSSLMSGVHRTVVIANNSTTVPRKDPMATDDC 45
            +F     GC +L S  +  +V++ NST +   +  + DDC
Sbjct: 2200 KFTQCDAGCQTLNSADYDGIVVSANSTVIVGVNATSRDDC 2239


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
            protein.
          Length = 2920

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 164  RFGHSCPGCSSLMSGVHRTVVIANNSTTVPRKDPMATDDC 45
            +F     GC +L S  +  +V++ NST +   +  + DDC
Sbjct: 2200 KFTQCDAGCQTLNSADYDGIVVSANSTVIVGVNATSRDDC 2239


>AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.
          Length = 1223

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 164 RFGHSCPGCSSLMSGVHRTVVIANNSTTVPRKDPMATDDC 45
           +F     GC +L S  +  +V++ NST +   +  + DDC
Sbjct: 503 KFTQCDAGCQTLNSADYDGIVVSANSTVIVGVNATSRDDC 542


>AC024880-2|AAF60914.4|  665|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2a protein.
          Length = 665

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +1

Query: 136 LQPGQEWPKRNSVQQPKPDVRLDDSEREEF--STDDPLETEVTADTLAITPKLIAPKEEP 309
           +   QE  +   V     D  ++D + EE+  +T  P  +  T++ +A  P   APK E 
Sbjct: 233 ISASQESGETTDVLLELEDDNIEDVQVEEYEETTKSPTVSTSTSEPMAAAPITDAPKTEN 292

Query: 310 QKVDYTGAQIWKVSTKSS 363
              +YT   IW   T  S
Sbjct: 293 VSRNYTRI-IWDRRTVRS 309


>AC024880-1|AAR12985.1|  634|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.2b protein.
          Length = 634

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +1

Query: 136 LQPGQEWPKRNSVQQPKPDVRLDDSEREEF--STDDPLETEVTADTLAITPKLIAPKEEP 309
           +   QE  +   V     D  ++D + EE+  +T  P  +  T++ +A  P   APK E 
Sbjct: 183 ISASQESGETTDVLLELEDDNIEDVQVEEYEETTKSPTVSTSTSEPMAAAPITDAPKTEN 242

Query: 310 QKVDYTGAQIWKVSTKSS 363
              +YT   IW   T  S
Sbjct: 243 VSRNYTRI-IWDRRTVRS 259


>AF000261-11|AAB52931.1|  268|Caenorhabditis elegans Hypothetical
           protein F19B10.1 protein.
          Length = 268

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 23/60 (38%), Positives = 31/60 (51%)
 Frame = +1

Query: 235 DPLETEVTADTLAITPKLIAPKEEPQKVDYTGAQIWKVSTKSSGIRVTIGRLRRRNLIST 414
           D  ET++   T    PK  AP  E    D T +Q   VST SS I V+  R +RR ++S+
Sbjct: 110 DSQETKIVWKTSPAKPK--APPVEDDPTDPTDSQ---VSTVSSIIPVSSPRGKRRIVVSS 164


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical
           protein F15D3.1a protein.
          Length = 3674

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 124 LINELQPGQEWPKRNSVQQPKPDVR 198
           L +EL+P Q+W ++  V + K D+R
Sbjct: 706 LSHELEPLQDWSEKFEVSRKKDDIR 730


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical
           protein F15D3.1a protein.
          Length = 3674

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 124 LINELQPGQEWPKRNSVQQPKPDVR 198
           L +EL+P Q+W ++  V + K D+R
Sbjct: 706 LSHELEPLQDWSEKFEVSRKKDDIR 730


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
           protein.
          Length = 3674

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 124 LINELQPGQEWPKRNSVQQPKPDVR 198
           L +EL+P Q+W ++  V + K D+R
Sbjct: 706 LSHELEPLQDWSEKFEVSRKKDDIR 730


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.313    0.130    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,824,380
Number of Sequences: 27780
Number of extensions: 215806
Number of successful extensions: 555
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)