Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I15
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical pr...    30   0.91 
Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical pr...    30   0.91 
AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF016451-6|AAB66000.2|  379|Caenorhabditis elegans Serpentine re...    27   6.4  
Z81527-2|CAB04270.1|  361|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical
           protein F59A2.1b protein.
          Length = 884

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 26  DNNEKIVETKKNIR*VAVYIRISDSLKLLGNCNLPNLIIF 145
           DN  +IV  ++ +  +    RI  S+KL    NLPN++ F
Sbjct: 804 DNKYRIVMRREQVHKLCANFRIEKSMKLSPKPNLPNVLTF 843


>Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical
           protein F59A2.1a protein.
          Length = 860

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 26  DNNEKIVETKKNIR*VAVYIRISDSLKLLGNCNLPNLIIF 145
           DN  +IV  ++ +  +    RI  S+KL    NLPN++ F
Sbjct: 780 DNKYRIVMRREQVHKLCANFRIEKSMKLSPKPNLPNVLTF 819


>AL023837-1|CAA19499.1|  718|Caenorhabditis elegans Hypothetical
           protein Y37H2C.1 protein.
          Length = 718

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
 Frame = -1

Query: 492 IFFLSIMFLV*YNYFYFIILNINWNFQWFIFSYNCSNLRTMFS*TYVPVGISLDEXXXXX 313
           I+F +   LV Y +FY II  I + +  F FSY    +R +F   ++ +  +L+      
Sbjct: 599 IYFSAKGQLVIYLFFY-IIQKIRFEWSSFTFSY---TIRCIFLIVFLVLFQTLNRYFANF 654

Query: 312 XX---XXXIPSY*RYFNKNCIMLNLYINLVIHTSFTLNLFYFLLV 187
                    P+  R  N  CI+  +  N V H +  +   +F+L+
Sbjct: 655 ASPFNFYESPALSRELNSECIIPGIDWNNVRHYNAVITCSFFILL 699


>Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical
           protein T19C4.2 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -1

Query: 270 KNCIMLNLYINLVIHTSFTLNLFYFLLVTRKYQYFLVSS*IVKMIKLGRLQL 115
           + C + ++Y  L++  +FTLN+ Y L+    Y  + ++S    +I + RL +
Sbjct: 66  QTCALSSIY--LMLENNFTLNIMYSLMYNMSYVQYAITS----IISINRLSI 111


>AF016451-6|AAB66000.2|  379|Caenorhabditis elegans Serpentine
           receptor, class w protein140 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 234 VIHTSFTLNLFYFLLVTRK 178
           V   SF++NLF+F+++TRK
Sbjct: 48  VAAVSFSINLFHFIILTRK 66


>Z81527-2|CAB04270.1|  361|Caenorhabditis elegans Hypothetical
           protein F35E12.2 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -1

Query: 249 LYINLVIHTSFTLNLFYFLLVTRKYQYFLV 160
           L+IN + +TS    ++ F+ + +KYQ+ L+
Sbjct: 113 LHINTISNTSQMFAIYEFVNIAKKYQHVLI 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,041,812
Number of Sequences: 27780
Number of extensions: 179540
Number of successful extensions: 344
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)