Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I14
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    89   5e-19
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    89   5e-19
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...    53   2e-08
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...    53   2e-08
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...    53   2e-08
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    26   2.9  

>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 88.6 bits (210), Expect = 5e-19
 Identities = 46/82 (56%), Positives = 53/82 (64%)
 Frame = -2

Query: 511 GKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXKNYSTPXXXXXXXXXXKLAVLRYY 332
           GKQLEDGRTLSDYNIQKESTLHLV            K Y+TP          +LAVL+YY
Sbjct: 47  GKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYY 106

Query: 331 KVDENGKIHRLRRECTGEQCGA 266
           KV+++G + RLRREC    CGA
Sbjct: 107 KVEDDGSVKRLRREC--PNCGA 126



 Score = 30.3 bits (65), Expect = 0.18
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 258 FMAVMEDRHYCGKCHSTM 205
           FMA  +DR YCG+CH T+
Sbjct: 129 FMANHKDRLYCGRCHLTL 146


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 88.6 bits (210), Expect = 5e-19
 Identities = 46/82 (56%), Positives = 53/82 (64%)
 Frame = -2

Query: 511 GKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXKNYSTPXXXXXXXXXXKLAVLRYY 332
           GKQLEDGRTLSDYNIQKESTLHLV            K Y+TP          +LAVL+YY
Sbjct: 47  GKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYTTPKKIKHKHKKVELAVLKYY 106

Query: 331 KVDENGKIHRLRRECTGEQCGA 266
           KV+++G + RLRREC    CGA
Sbjct: 107 KVEDDGSVKRLRREC--PNCGA 126



 Score = 30.3 bits (65), Expect = 0.18
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 258 FMAVMEDRHYCGKCHSTM 205
           FMA  +DR YCG+CH T+
Sbjct: 129 FMANHKDRLYCGRCHLTL 146


>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -2

Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
           GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 47  GKQLEDGRTLSDYNIQKESTLHLV 70


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -2

Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
           GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 47  GKQLEDGRTLSDYNIQKESTLHLV 70


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -2

Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
           GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 47  GKQLEDGRTLSDYNIQKESTLHLV 70



 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -2

Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
           GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLV 146



 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -2

Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
           GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 199 GKQLEDGRTLSDYNIQKESTLHLV 222



 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -2

Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
           GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 275 GKQLEDGRTLSDYNIQKESTLHLV 298



 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -2

Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
           GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 351 GKQLEDGRTLSDYNIQKESTLHLV 374


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
           GKQ+ D +    Y+++  S LHLV
Sbjct: 47  GKQMADDKNAESYHLEGGSVLHLV 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,379,296
Number of Sequences: 5004
Number of extensions: 18714
Number of successful extensions: 46
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)