Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I14
(512 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 60 7e-10
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 60 7e-10
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 53 1e-07
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 53 1e-07
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 53 1e-07
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 53 1e-07
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 53 1e-07
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 32 0.28
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z46933-1|CAA87034.1| 142|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81567-5|CAB04588.2| 154|Caenorhabditis elegans Hypothetical pr... 28 3.4
U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical pr... 28 3.4
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 28 3.4
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 60.5 bits (140), Expect = 7e-10
Identities = 35/81 (43%), Positives = 44/81 (54%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXKNYSTPXXXXXXXXXXKLAVLRYY 332
G+QLED SD I E+T+++ K Y+TP KLAVL+YY
Sbjct: 45 GRQLED----SDCGIDSEATIYVNLELLGGAKKRKKKVYTTPKKNKRKPKKVKLAVLKYY 100
Query: 331 KVDENGKIHRLRRECTGEQCG 269
K+DENGKI RLR+EC CG
Sbjct: 101 KIDENGKITRLRKECQQPSCG 121
Score = 38.7 bits (86), Expect = 0.002
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 264 GVFMAVMEDRHYCGKCHSTMV 202
GVFMA +RHYCG+CH T+V
Sbjct: 123 GVFMAQHANRHYCGRCHDTLV 143
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 60.5 bits (140), Expect = 7e-10
Identities = 35/81 (43%), Positives = 44/81 (54%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXKNYSTPXXXXXXXXXXKLAVLRYY 332
G+QLED SD I E+T+++ K Y+TP KLAVL+YY
Sbjct: 45 GRQLED----SDCGIDSEATIYVNLELLGGAKKRKKKVYTTPKKNKRKPKKVKLAVLKYY 100
Query: 331 KVDENGKIHRLRRECTGEQCG 269
K+DENGKI RLR+EC CG
Sbjct: 101 KIDENGKITRLRKECQQPSCG 121
Score = 38.7 bits (86), Expect = 0.002
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 264 GVFMAVMEDRHYCGKCHSTMV 202
GVFMA +RHYCG+CH T+V
Sbjct: 123 GVFMAQHANRHYCGRCHDTLV 143
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 47 GKQLEDGRTLSDYNIQKESTLHLV 70
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 47 GKQLEDGRTLSDYNIQKESTLHLV 70
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLV 146
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 199 GKQLEDGRTLSDYNIQKESTLHLV 222
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 275 GKQLEDGRTLSDYNIQKESTLHLV 298
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 351 GKQLEDGRTLSDYNIQKESTLHLV 374
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 427 GKQLEDGRTLSDYNIQKESTLHLV 450
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 47 GKQLEDGRTLSDYNIQKESTLHLV 70
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLV 146
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 199 GKQLEDGRTLSDYNIQKESTLHLV 222
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 275 GKQLEDGRTLSDYNIQKESTLHLV 298
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 351 GKQLEDGRTLSDYNIQKESTLHLV 374
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 427 GKQLEDGRTLSDYNIQKESTLHLV 450
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 503 GKQLEDGRTLSDYNIQKESTLHLV 526
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 579 GKQLEDGRTLSDYNIQKESTLHLV 602
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 655 GKQLEDGRTLSDYNIQKESTLHLV 678
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 731 GKQLEDGRTLSDYNIQKESTLHLV 754
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 807 GKQLEDGRTLSDYNIQKESTLHLV 830
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 47 GKQLEDGRTLSDYNIQKESTLHLV 70
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 123 GKQLEDGRTLSDYNIQKESTLHLV 146
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 199 GKQLEDGRTLSDYNIQKESTLHLV 222
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 275 GKQLEDGRTLSDYNIQKESTLHLV 298
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 351 GKQLEDGRTLSDYNIQKESTLHLV 374
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 427 GKQLEDGRTLSDYNIQKESTLHLV 450
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 503 GKQLEDGRTLSDYNIQKESTLHLV 526
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 579 GKQLEDGRTLSDYNIQKESTLHLV 602
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 655 GKQLEDGRTLSDYNIQKESTLHLV 678
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 731 GKQLEDGRTLSDYNIQKESTLHLV 754
Score = 52.0 bits (119), Expect = 2e-07
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQK+STLHLV
Sbjct: 807 GKQLEDGRTLSDYNIQKQSTLHLV 830
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 47 GKQLEDGRTLSDYNIQKESTLHLV 70
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 31.9 bits (69), Expect = 0.28
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTL 449
GK+LED ++ DYNIQK ST+
Sbjct: 199 GKRLEDHCSIGDYNIQKSSTI 219
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 511 GKQLEDGRTLSDYNIQKESTLHLV 440
GKQ+ D +T +DY + S LHLV
Sbjct: 47 GKQMNDDKTAADYKVLGGSVLHLV 70
>Z46933-1|CAA87034.1| 142|Caenorhabditis elegans Hypothetical
protein F34H10.1 protein.
Length = 142
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = -2
Query: 481 SDYNIQKESTLHLVXXXXXXXXXXXXKNYSTPXXXXXXXXXXKLAVLRYYKVDENGKIHR 302
SD I+ +T+++ K Y+ P +Y+K+DENGKI R
Sbjct: 52 SDCGIKAAATIYVNCELLGGAKKRKKKVYTIPKKNNISQRKSSSPSPKYFKIDENGKISR 111
Query: 301 L 299
L
Sbjct: 112 L 112
>Z81567-5|CAB04588.2| 154|Caenorhabditis elegans Hypothetical
protein K08C9.7 protein.
Length = 154
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -2
Query: 340 RYYKVDENGKIHRL 299
+Y+K+DENGKI RL
Sbjct: 111 KYFKIDENGKISRL 124
>U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical
protein C16C8.13 protein.
Length = 244
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -2
Query: 508 KQLEDGRTLSDYNIQKESTLHL 443
K LED TL+ YNIQ+ STL L
Sbjct: 220 KVLEDDHTLAYYNIQEGSTLGL 241
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 499 EDGRTLSDYNIQKESTLHL 443
+D RT+SDYNI+ STL L
Sbjct: 135 KDQRTISDYNIKNGSTLRL 153
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 505 QLEDGRTLSDYNIQKESTLHLV 440
QLE+ R L YNI+ E +HLV
Sbjct: 209 QLENDRALFAYNIRDEDIIHLV 230
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,961,798
Number of Sequences: 27780
Number of extensions: 118321
Number of successful extensions: 322
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -