Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I13
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 261 4e-71
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 133 1e-32
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 118 4e-28
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 113 2e-26
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 6e-21
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 77 2e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 73 3e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 70 2e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 1e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.00
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 27 1.7
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 27 2.3
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 3.0
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 4.0
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 4.0
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 7.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 7.0
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 9.3
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 25 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 261 bits (640), Expect = 4e-71
Identities = 120/135 (88%), Positives = 126/135 (93%)
Frame = +1
Query: 13 ELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLS 192
ELPDGQVITIGNERFR PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+S
Sbjct: 241 ELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMS 300
Query: 193 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 372
GGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 373 EYDESGPSIVHRKCF 417
EYDESGP IV+RKCF
Sbjct: 361 EYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 133 bits (322), Expect = 1e-32
Identities = 60/135 (44%), Positives = 91/135 (67%)
Frame = +1
Query: 13 ELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLS 192
+LPD Q IT+G E F PE LF P +G EA G+H + SI+ D+D+R LY+N VLS
Sbjct: 246 QLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLS 305
Query: 193 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 372
GG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +
Sbjct: 306 GGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSE 365
Query: 373 EYDESGPSIVHRKCF 417
EY ++ +++ R+ F
Sbjct: 366 EY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 118 bits (285), Expect = 4e-28
Identities = 62/141 (43%), Positives = 90/141 (63%), Gaps = 12/141 (8%)
Frame = +1
Query: 4 RGDELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANT 183
R LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY
Sbjct: 238 RNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAI 297
Query: 184 VLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSIL 330
VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++L
Sbjct: 298 VLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVL 357
Query: 331 AS-LSTFQQMWISKQEYDESG 390
A ++ MW+SK E++E G
Sbjct: 358 ADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 113 bits (271), Expect = 2e-26
Identities = 59/137 (43%), Positives = 78/137 (56%), Gaps = 11/137 (8%)
Frame = +1
Query: 13 ELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRK 165
E PDG G ERFR E LF PSF + G+HE Y SI+ CD ++R
Sbjct: 282 EFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRS 341
Query: 166 DLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSILASL 339
L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 342 PLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASL 401
Query: 340 STFQQMWISKQEYDESG 390
FQ +W+SKQEYDE G
Sbjct: 402 DNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 6e-21
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = +1
Query: 109 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 288
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 289 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 414
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 77.0 bits (181), Expect = 2e-15
Identities = 42/128 (32%), Positives = 64/128 (50%)
Frame = +1
Query: 28 QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 207
QV+ + NERF PE LF PS + + GI E S+ +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 208 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 387
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 388 GPSIVHRK 411
G +I+ RK
Sbjct: 391 GANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 72.9 bits (171), Expect = 3e-14
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Frame = +1
Query: 34 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 210
I +G ERF PE F P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 211 PGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTF 348
+R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 349 QQMWISKQEYDESGPSIVHR 408
+K +Y+E G SI R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.1 bits (164), Expect = 2e-13
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = +1
Query: 49 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 228
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 229 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 402
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 163 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 333
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 334 SLSTFQQMWISKQEYDESGPSIVHRK 411
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.00
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +1
Query: 310 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 411
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = -1
Query: 228 TVGNTRVHGGTTRQYCVGVQVFTDVNVTLHDGVVCRLVDATSFHTQERGLEESLWATEP 52
T+G+ +GG GV V T VTLH G C + D T L+ + W P
Sbjct: 227 TLGDDWPNGGEI-DIVEGVNVGTSNQVTLHTGDGCEMEDIKRVMT-GTALQTNCWVDAP 283
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 261 GWSEGCDFLLHTVGNTRVHGGT 196
GW+ D +LH G V GGT
Sbjct: 240 GWTTPKDLILHLAGKLTVRGGT 261
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 225 PYAEGNHSPRSIHDEDQNH 281
P++ NHSPR IH +NH
Sbjct: 172 PFSCLNHSPRQIHKTVRNH 190
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 4.0
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Frame = +1
Query: 10 DELPDGQVITIGNERFRCPEALFQPSFLG-MEACGIHETTYNSIMKCDVDIRKDLYANTV 186
D+ + ++T+ NE + E L S + E+ + CD+D ++ +
Sbjct: 129 DKSENQPLVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDLD---PIFKSLA 185
Query: 187 LSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYS 306
+ T ++P AD I ++K A RKYS
Sbjct: 186 FTDDTNLFPAFADSEAALIMLKKREMTRVKHRAGRPRKYS 225
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 4.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 235 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 345
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 156 VNVTLHDGVVCRLVDATSFHTQERGLEESLWATEPFV 46
VN T HDG V + T + Q R +SL + EP V
Sbjct: 610 VNATYHDGTVRYNLFNTYGYDQSRVTYDSLTSIEPNV 646
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.0 bits (52), Expect = 7.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 306 RILPLWWRDDFDLHRG 259
RI P+WW D+F G
Sbjct: 178 RIQPIWWMDEFAERNG 193
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 9.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 337 LSTFQQMWISKQEYDESGPSIV 402
L + + W KQ++DES S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 9.3
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -1
Query: 159 DVNVTLHDGVVCRLVDATSFHTQERGLEESLWATEPFVSDCDDLTVGEFVA 7
D ++ +DG L A Q RG + L A + + CD +++ + +A
Sbjct: 89 DTTISSYDGAGAMLAKAQGRSVQVRGEKNLLTAYKEIGAMCDAISLPKVIA 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,068
Number of Sequences: 5004
Number of extensions: 49791
Number of successful extensions: 176
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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