Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I12
         (192 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   0.79 
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   1.4  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    23   4.2  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    23   7.4  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    23   7.4  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    22   9.8  
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    22   9.8  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    22   9.8  

>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.8 bits (54), Expect = 0.79
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 18  NARFIKYQNLRIKHINQDKY 77
           N+R+IKYQ  RI+  N + +
Sbjct: 147 NSRYIKYQGRRIRFFNSEPF 166


>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 93  FILITCIYPG*YA*SLSFDIL*NVRLKRPL 4
           F L+  +Y G Y  + S D L N+R K P+
Sbjct: 81  FALVFTLYSGTYMTANSIDTLDNIRHKNPV 110


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -1

Query: 192 EPKILSNTESRSISSAL*GRRHDINNRVTNN 100
           +PK+  N +++S  S+   +   +N+ VT+N
Sbjct: 179 KPKVSGNMQNKSGVSSYSSKSQSVNSSVTSN 209


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 158 DLDSVLERIFG 190
           DL S+LERIFG
Sbjct: 301 DLGSILERIFG 311


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 188  RKFFPTRNPGLYPRRCKVGGMISTIELLIMC 96
            ++F  T + GLY R  + G  +S+ +  +MC
Sbjct: 1340 KQFIQTLDGGLYSRVTEGGANLSSGQRQLMC 1370


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 191 NRKFFPTRNPGLYPRRCKVGGMISTIEL 108
           + +F     PG+  +RCK G  I  +E+
Sbjct: 262 DEEFEKPNEPGVIVQRCKCGLEIEQLEI 289


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 82  Y*DELHIISNSIVDIMPPTLQRRGYRPGFR 171
           Y   L ++SN +VD+ P    R  ++   +
Sbjct: 309 YKQSLFLVSNGLVDVKPLITHRFAFKDALK 338


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 131 LRPYNAEDIDLDSVLERIFG 190
           LR  N E++  DS+ + IFG
Sbjct: 50  LREENKENLSSDSIRQMIFG 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,020
Number of Sequences: 5004
Number of extensions: 10810
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)