Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I12
         (192 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305...    26   4.9  
01_06_1278 + 35939392-35939463,35939546-35939819,35939910-359400...    26   4.9  
01_07_0220 + 42087390-42087645,42087883-42087989                       25   6.4  
01_06_0664 + 30999365-31002089,31002220-31002686                       25   8.5  

>02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,
            3052308-3052377,3052417-3052668,3053235-3055297
          Length = 1520

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 94   LHIISNSIVDIMPPTLQRRGYRPGFRVGKN 183
            LH+ +N + D +PP L    +   F V  N
Sbjct: 1341 LHLSNNHLTDAIPPGLSNLHFLSAFNVSNN 1370


>01_06_1278 +
           35939392-35939463,35939546-35939819,35939910-35940012,
           35940127-35940257,35940384-35940465,35940554-35940686,
           35941134-35941278,35941318-35941475,35941559-35941641,
           35942276-35942330,35942466-35942503,35942670-35942730
          Length = 444

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 61  STRINTSY*DELHIISNSIVDIMPPTLQRRGYRPG 165
           S+R +    D+ H++ + + DI+P   +++   PG
Sbjct: 395 SSRTDDQAADKQHVVPHEVKDILPTEAKKKSVDPG 429


>01_07_0220 + 42087390-42087645,42087883-42087989
          Length = 120

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 112 SIVDIMPPTLQRRGYR--PGFRVG 177
           S VD+  P+L RRG+R  PG R G
Sbjct: 85  SSVDLWVPSLGRRGFRWSPGVRQG 108


>01_06_0664 + 30999365-31002089,31002220-31002686
          Length = 1063

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 91  ELHIISNSIVDIMPPTLQRR 150
           E+H+ +NS+  ++PP L ++
Sbjct: 349 EIHLFNNSLTGVLPPELGQK 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,535,440
Number of Sequences: 37544
Number of extensions: 60372
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)