Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I12
         (192 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical pr...    26   3.2  
M98552-7|AAK82925.2|  355|Caenorhabditis elegans Hypothetical pr...    26   3.2  
U41534-13|AAD31050.2|  422|Caenorhabditis elegans Hypothetical p...    25   9.8  
U41534-12|AAM22027.1|  357|Caenorhabditis elegans Hypothetical p...    25   9.8  
U00058-4|AAD31932.3|  249|Caenorhabditis elegans Dnaj domain (pr...    25   9.8  

>Z68005-1|CAA91991.1| 1199|Caenorhabditis elegans Hypothetical
           protein F59F3.5 protein.
          Length = 1199

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -1

Query: 189 PKILSNTESRSISSAL*GRRHDINNRV 109
           P  L N  SRSI SA  G+  DIN +V
Sbjct: 680 PPFLLNNNSRSIISASNGQMFDINCKV 706


>M98552-7|AAK82925.2|  355|Caenorhabditis elegans Hypothetical
          protein ZK370.7 protein.
          Length = 355

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 30 IKYQNLRIKHINQDKYKLL 86
          +K+QN+ I H ++DK KLL
Sbjct: 1  MKFQNVHISHQDEDKEKLL 19


>U41534-13|AAD31050.2|  422|Caenorhabditis elegans Hypothetical
           protein C16A3.10a protein.
          Length = 422

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 100 CVIHLNNLYLSWLICLILK 44
           C I +N  Y +W +CL LK
Sbjct: 359 CAIVINKKYDAWKVCLKLK 377


>U41534-12|AAM22027.1|  357|Caenorhabditis elegans Hypothetical
           protein C16A3.10b protein.
          Length = 357

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 100 CVIHLNNLYLSWLICLILK 44
           C I +N  Y +W +CL LK
Sbjct: 294 CAIVINKKYDAWKVCLKLK 312


>U00058-4|AAD31932.3|  249|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 24 protein.
          Length = 249

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 173 TRNPGLYPRRCKVGGM 126
           T NPGL+ RR   GGM
Sbjct: 74  TENPGLHRRRSTPGGM 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,068,716
Number of Sequences: 27780
Number of extensions: 57413
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)