Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I11
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   122   2e-29
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   4.5  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   5.9  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  122 bits (295), Expect = 2e-29
 Identities = 59/115 (51%), Positives = 79/115 (68%)
 Frame = +2

Query: 104 DWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAGRGF 283
           DWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ KVRAGRGF
Sbjct: 17  DWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNMKVRAGRGF 75

Query: 284 TLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQSVEVNIELVLFFSRRA 448
           TL E++A+G++   A TIGI VD RRRN+S ESLQ NV+ ++V +  ++ F R+A
Sbjct: 76  TLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKA 130


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 314 NPSFARTIGIAVDPRRRNKSVESLQINV 397
           NPS A    +A D    ++S+ES   NV
Sbjct: 396 NPSVAAASNVAADQSTEDESIESTSTNV 423


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 463 PSVPSCPSGKE*DELYIHFNT 401
           P++P C S KE D+L  +F T
Sbjct: 566 PTLPVCDSEKENDDLECYFRT 586


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,592
Number of Sequences: 5004
Number of extensions: 33053
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)