Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I11
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   114   4e-26
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    78   4e-15
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    28   4.0  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  114 bits (274), Expect = 4e-26
 Identities = 57/125 (45%), Positives = 78/125 (62%), Gaps = 1/125 (0%)
 Frame = +2

Query: 62  KGNNMIPKXAISISDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCP 241
           +GN M+         W + +KTWF+QPAR+ RR+QNR               LR VVRCP
Sbjct: 4   RGNQMLGNAHFR-KHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCP 62

Query: 242 TVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQSV-EVNI 418
             RY+TK R GRGF+L+E++A+G++ + ARTIGIAVD RR NK+ E L+ N   + E   
Sbjct: 63  QKRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKA 122

Query: 419 ELVLF 433
           +L+LF
Sbjct: 123 KLILF 127


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 77.8 bits (183), Expect = 4e-15
 Identities = 37/85 (43%), Positives = 50/85 (58%)
 Frame = +2

Query: 62  KGNNMIPKXAISISDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCP 241
           +GN M+         W + +KTWF+QPAR+ RR+QNR               LR VVRCP
Sbjct: 4   RGNQMLGNAHFR-KHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCP 62

Query: 242 TVRYHTKVRAGRGFTLREIRASGLN 316
             RY+TK R GRGF+L+E++A+  N
Sbjct: 63  QKRYNTKTRLGRGFSLQELKAAEEN 87


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 229 CSLPYCALSYKSSCRQRIYPT 291
           CS P C  S +SSC+Q   PT
Sbjct: 204 CSTPICIQSCQSSCQQACQPT 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,138,862
Number of Sequences: 27780
Number of extensions: 184921
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)