Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I10
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    28   0.64 
SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|...    28   0.84 
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    26   2.6  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    26   3.4  
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    25   4.5  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   5.9  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   7.8  

>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 76  GKWESFRIFLWNSETGQFL 132
           G  +SF IF+W+ +TGQ L
Sbjct: 442 GSQDSFEIFMWSVQTGQLL 460


>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 222

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 159 NPSILLDLLCRAPWASSP 212
           +PSI  DL C  PWA SP
Sbjct: 103 DPSIEFDLYCDQPWAFSP 120


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 278 LIGNNPGLGFRPMPDSANVESTLIYYKANDKGSV--LK-WSK 394
           ++G N G+G   + + +N E   ++  A   GS   LK WSK
Sbjct: 11  IVGGNRGIGLSLVKELSNKEGVTVFASARGPGSASELKDWSK 52


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 278 LIGNNPGLGFRPMPDSANVESTLIYYKANDKGSVLK---WSK 394
           + G N G+G   + + +N + T+++  A   G+  K   WSK
Sbjct: 10  IAGGNRGIGLSLVKELSNRKGTVVFASARKPGAATKLQEWSK 51


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 221 AIFYQTLDSKMPKWQLDASLIG 286
           A+F+  LD K+ +W+  +SL+G
Sbjct: 88  ALFFDFLDGKVARWRGKSSLMG 109


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 52  YYSPPPDLGKWESFRIFLWNSE 117
           +Y P P   KW   R   WN+E
Sbjct: 542 FYLPSPVPRKWRQLRFQQWNNE 563


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +2

Query: 218 LAIFYQTLDSKMPKW 262
           + ++Y+ LD+K+P+W
Sbjct: 834 IIVYYEKLDTKIPQW 848


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,284
Number of Sequences: 5004
Number of extensions: 48566
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)