Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0011_I10
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192... 27 1.8
12_02_0270 - 16626301-16626630 28 4.5
11_06_0449 + 23741072-23741506,23741599-23741783,23742172-23742307 27 6.0
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 27 6.0
04_03_0070 + 10677677-10679989 27 6.0
07_03_0737 + 21087442-21088282,21088402-21088524,21088623-210887... 27 7.9
06_01_0288 - 2106113-2109055 27 7.9
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 27 7.9
02_01_0179 - 1227573-1227803,1227916-1228138,1228159-1228185,122... 27 7.9
>01_07_0198 -
41918276-41918408,41918486-41918841,41919091-41919237,
41919666-41921789,41922150-41922344,41922488-41922568,
41923325-41923414,41923507-41923593,41923914-41923961
Length = 1086
Score = 27.1 bits (57), Expect(2) = 1.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 217 HGGEEAHGARHRRSSRIEGF*PNSLPCGPKTVQSLSSTG 101
HG + +H R +EG +S+ CGP ++S G
Sbjct: 392 HGNDVSHWVPKRVDGPLEGIHVSSISCGPWHTALVTSAG 430
Score = 20.6 bits (41), Expect(2) = 1.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = -2
Query: 343 GTFHVGRIRHRSETQTWV 290
GTF G + H ++ WV
Sbjct: 383 GTFKFGLLGHGNDVSHWV 400
>12_02_0270 - 16626301-16626630
Length = 109
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 73 DLVVGSSIVQQPSSCPP*SHADL 5
DL +GSS P+ PP +H DL
Sbjct: 19 DLALGSSTTANPAGSPPRAHVDL 41
>11_06_0449 + 23741072-23741506,23741599-23741783,23742172-23742307
Length = 251
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 287 NNPGLGFRPMPDSANVESTLIYYKANDKG 373
N G G M +VE+ ++Y+ NDKG
Sbjct: 98 NKAGTGSFTMAGDGSVEAAVVYFGKNDKG 126
>05_04_0149 -
18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 217 HGGEEAHGARHRRSSRIEGF*PNSLPCGPKTVQSLSSTG 101
HG E +H R + +EG +++ CGP ++S G
Sbjct: 466 HGNEVSHWVPKRVNGPLEGIHVSAISCGPWHTAIVTSAG 504
>04_03_0070 + 10677677-10679989
Length = 770
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 135 PHGSELG*NPSILLDLLCRAPWASSPPCWQSSTRLSTPRCPNGSLTHRSLATTQ--VWVS 308
P GS + + L +LC A +++S P +S L CPN + + A + VS
Sbjct: 67 PPGSGVPPKAARLRCVLCAATFSASNPSRTASEHLKRGACPNFAAQQGAAAQPHQAMTVS 126
Query: 309 DLCRILPTWKVP*STTKQ 362
++P +P S+ ++
Sbjct: 127 AASSVVPISSIPPSSQRR 144
>07_03_0737 +
21087442-21088282,21088402-21088524,21088623-21088744,
21088784-21089027,21089430-21089670,21089746-21089899,
21090179-21090214,21090215-21090520
Length = 688
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Frame = -2
Query: 268 KLPFGH-LGVESLVEDCQHGGEEAHG-------ARHRRSSRIEGF 158
KLP G + V+ L+E C HG + H +H+ R++GF
Sbjct: 375 KLPDGQEIAVKKLIESCGHGLNQLHNEVLVLAELQHKNLVRLQGF 419
>06_01_0288 - 2106113-2109055
Length = 980
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 210 PPCWQSSTRLSTPRCPNGSLTHRSLATTQVWVSDL 314
P CW++S+RL T N +L H + +T +++ L
Sbjct: 585 PDCWKNSSRLHTIDFSNNNL-HGEIPSTMGFITSL 618
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 245 SKMPKWQLDASLIGNNPG 298
SK+PKW D S G PG
Sbjct: 48 SKLPKWNYDGSSTGQAPG 65
>02_01_0179 -
1227573-1227803,1227916-1228138,1228159-1228185,
1228519-1228651,1228748-1228865,1229357-1229451,
1229886-1230048
Length = 329
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 103 LWNSETGQFLGRTGASWAKILLFYLIFYAVLRGLLRRHAG 222
LWNS+ G + S K+ L YL Y + + RH G
Sbjct: 87 LWNSDHGHVVEACKDSLKKLRLDYLDLYLIHFPVATRHTG 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,787,063
Number of Sequences: 37544
Number of extensions: 357087
Number of successful extensions: 1054
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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