Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I10
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81550-4|CAB04477.1|  317|Caenorhabditis elegans Hypothetical pr...    58   3e-09
Z81037-5|CAB02752.1|  320|Caenorhabditis elegans Hypothetical pr...    52   2e-07
Z78541-3|CAD44120.1|  733|Caenorhabditis elegans Hypothetical pr...    31   0.43 
Z70269-4|CAA94223.2|  733|Caenorhabditis elegans Hypothetical pr...    31   0.43 
Z70269-1|CAD44161.1|  770|Caenorhabditis elegans Hypothetical pr...    31   0.43 
U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    30   1.00 
Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z46242-10|CAA86333.2|  113|Caenorhabditis elegans Hypothetical p...    29   2.3  
U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical p...    28   3.1  
Z74038-5|CAA98494.1|  137|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter...    27   9.3  

>Z81550-4|CAB04477.1|  317|Caenorhabditis elegans Hypothetical
           protein F55F3.3 protein.
          Length = 317

 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 32/92 (34%), Positives = 54/92 (58%)
 Frame = +2

Query: 203 FFAAMLAIFYQTLDSKMPKWQLDASLIGNNPGLGFRPMPDSANVESTLIYYKANDKGSVL 382
           FF   L+IF +TLD K+P++    ++IG NPG+G++P     N +STLI +   D  S  
Sbjct: 63  FFIGCLSIFLRTLDPKVPRFYGKGTIIGVNPGVGYQPWL-KENPDSTLIKFNLQDSKSWE 121

Query: 383 KWSKIIDDFLDQYRKKGSGSGEIQVAENRRAL 478
            + K +D++L +Y K  + + +   ++N  AL
Sbjct: 122 PYVKQLDNYLSKY-KNTNETRDCGASDNNDAL 152



 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 20/37 (54%), Positives = 26/37 (70%)
 Frame = +1

Query: 85  ESFRIFLWNSETGQFLGRTGASWAKILLFYLIFYAVL 195
           E+F  FL+N + G  LGRTG SW +I +FY+IFY  L
Sbjct: 24  ETFAQFLYNKDKGTVLGRTGTSWCQITVFYIIFYIFL 60


>Z81037-5|CAB02752.1|  320|Caenorhabditis elegans Hypothetical
           protein C17E4.9 protein.
          Length = 320

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = +1

Query: 85  ESFRIFLWNSETGQFLGRTGASWAKILLFYLIFYAVL 195
           E+FR FL+N + G  +GRTG SW +I++FY+IFYA L
Sbjct: 27  ETFREFLYNKKNGTVMGRTGKSWFQIIVFYIIFYAFL 63



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 26/82 (31%), Positives = 45/82 (54%)
 Frame = +2

Query: 203 FFAAMLAIFYQTLDSKMPKWQLDASLIGNNPGLGFRPMPDSANVESTLIYYKANDKGSVL 382
           F+   L IF +TLD K+P++    ++IG NPG+G++P       +STLI Y   D+ S  
Sbjct: 66  FWLTCLTIFMKTLDPKVPRFYGKGTIIGVNPGVGYQPWL-KERPDSTLIKYNLRDQKSYK 124

Query: 383 KWSKIIDDFLDQYRKKGSGSGE 448
            + + +  +L +Y    + + E
Sbjct: 125 AYLEQMKTYLTKYDSNATETRE 146


>Z78541-3|CAD44120.1|  733|Caenorhabditis elegans Hypothetical
           protein ZK1086.1a protein.
          Length = 733

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 102 PVELRDWTVFGPHGSELG*---NPSILLDLLCRAPWASSPPCWQSSTRLS 242
           P+++  W   GP G   G    NP     L+CRAP   +  CW  +  LS
Sbjct: 108 PMDMSIWGNRGPLGQSFGSFTLNPLNTSFLICRAPSDQAGRCWMDALELS 157


>Z70269-4|CAA94223.2|  733|Caenorhabditis elegans Hypothetical
           protein ZK1086.1a protein.
          Length = 733

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 102 PVELRDWTVFGPHGSELG*---NPSILLDLLCRAPWASSPPCWQSSTRLS 242
           P+++  W   GP G   G    NP     L+CRAP   +  CW  +  LS
Sbjct: 108 PMDMSIWGNRGPLGQSFGSFTLNPLNTSFLICRAPSDQAGRCWMDALELS 157


>Z70269-1|CAD44161.1|  770|Caenorhabditis elegans Hypothetical
           protein ZK1086.1b protein.
          Length = 770

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 102 PVELRDWTVFGPHGSELG*---NPSILLDLLCRAPWASSPPCWQSSTRLS 242
           P+++  W   GP G   G    NP     L+CRAP   +  CW  +  LS
Sbjct: 145 PMDMSIWGNRGPLGQSFGSFTLNPLNTSFLICRAPSDQAGRCWMDALELS 194


>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -2

Query: 133 PKTVQSLSSTGIS*--RIPISLDLVVGSSIVQQPSSCPP 23
           P TV SL++T +S   R PI+   ++ SS+   P+S PP
Sbjct: 25  PPTVPSLAATAVSRTRRSPIAASTLILSSVPPPPTSTPP 63


>Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical
           protein Y57G11C.37 protein.
          Length = 837

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 116 RLDSFWAARERVGLKSFYST*SSMPCSVGFFAAMLAIF 229
           RL+ F+ A +   ++   +   +  C VG FAAMLAIF
Sbjct: 337 RLEPFYPAWKHTVMRYVITYPITFLCVVGMFAAMLAIF 374


>Z46242-10|CAA86333.2|  113|Caenorhabditis elegans Hypothetical
           protein F35G12.11 protein.
          Length = 113

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 73  LGKWESFRIFLWNSETGQFLGRTGASWAK 159
           L K     + ++N ETGQ++GRT A W K
Sbjct: 62  LDKLSDVSMMIFNRETGQYIGRTRA-WIK 89


>U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK1290.10 protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 228 KIASMAAKKPTEHGIEDQVE*KDFSPTRSRAAQKLSSL*VPQEYPEGFP 82
           K++  AA    +  I+D  E  DF PT   + +  +++ VP   P G P
Sbjct: 27  KVSGDAAPDKAQEPIDDNEEYDDFIPTIDSSVRLDNTIPVPPALPIGLP 75


>Z74038-5|CAA98494.1|  137|Caenorhabditis elegans Hypothetical
           protein F58B4.4 protein.
          Length = 137

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 266 LDASLIGNNPGLGFRPMPDSANVESTLIYYKANDKGSVLKWSKIIDDFLDQYRKK 430
           LD  L+    G GF P P   N+   L+  ++ D        KI+ D +D Y KK
Sbjct: 20  LDDQLL-TEEGSGFEP-PPIVNITVELVSNRSFDPEKNASNLKIVKDAVDDYSKK 72


>U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform a protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +3

Query: 192 APW-ASSPPCWQSSTRLSTPRCPNGSLTHRSLATTQVWVSDLC 317
           +PW A S  C    +R+ T  CP G+        TQ+  +  C
Sbjct: 497 SPWTACSATCGACGSRMRTRTCPPGNACSGEPVETQICNTQAC 539


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,475,191
Number of Sequences: 27780
Number of extensions: 270852
Number of successful extensions: 803
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)