Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0011_I09
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    27   1.3  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   1.8  
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   3.1  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   4.1  
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    25   5.4  
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    25   5.4  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    24   7.1  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   7.1  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    24   9.4  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    24   9.4  
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces...    24   9.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   9.4  

>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 299 ENVFNSTGAEWKIQKRLFTQNNIGQTKFYFECIHKVDNVLFIFV-ECITSSF 147
           E +F++      I  ++F +++I    F+  C H V N LF+F    IT+SF
Sbjct: 17  EVLFSAISFGISIYIKVFGRSSI--VTFFLLCFHLVPNALFLFPWTIITTSF 66


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -1

Query: 271 NGRSRSDFSLKTILDKPSFILSV 203
           N R++++ SLK +  +PSF+L+V
Sbjct: 16  NTRTKAELSLKQLEKEPSFVLAV 38


>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 128

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
 Frame = -1

Query: 289 LTAPAR-NGRSRSDFSLKTILDKPSFILSVSIKSITFFSYLS-------NVSHPVLTKG 137
           +T P R NG S   F+L T    PS+ LS +      F Y+S       + SHP ++ G
Sbjct: 1   MTGPFRYNGGSVRSFALTTNFSFPSYDLSFNETEHGVFCYVSRPLTKERSCSHPYISLG 59


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +3

Query: 78  DLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLKIKLGLSNIVLSEKSL 257
           DLKL++ KL    K   ER   ++   +T    EKN+ +     + ++  +   L+ K  
Sbjct: 326 DLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNNKEA 385

Query: 258 L----DLPFRAGAVK 290
           L    D  FRA  +K
Sbjct: 386 LISHYDDDFRAKELK 400


>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 248 FTQNNIGQTKFYFECIHKVDNVLFIFVECITSSFD 144
           FT+   G+ +  +EC+   D++LF+  + I S++D
Sbjct: 12  FTKIATGKVRDLYECVEFPDDLLFVATDRI-SAYD 45


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 292 CLTAPARNGRSRSDFSLKTILDKPSFI--LSVSIKSI 188
           CLT P      +SDFSL+   D       ++V+IKSI
Sbjct: 377 CLTVPTPPSYVKSDFSLEDGTDAALICEGINVNIKSI 413


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 154 PVLTKGIXXXXXXXXXXXLELFSFKSVSYKIG*GYLDVCPA 32
           P+LT  +             L S K V++ +  GY +V PA
Sbjct: 306 PILTSDVHSTEEKVLSIIGTLLSRKEVNWTLTAGYFNVYPA 346


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 111 DDKERYERMPFVKTGCDTFDKY-EKNVIDFMD 203
           D+K R   +P +  GC  + KY + + +DF D
Sbjct: 34  DEKNRINAVPLLLLGC-LYGKYKDDDFVDFFD 64


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 121 SATSVCLLSKLDVIHSTNMKRTLST 195
           S  SVC+LSK D  H    K+  ST
Sbjct: 874 SPDSVCILSKEDKKHWLKYKKNRST 898


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 65  DRVGI-FRCVSREVNLNVCDPR 3
           D V I FRC S+E +LN C  +
Sbjct: 97  DNVSICFRCGSKEHSLNACSKK 118


>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 108 FDDKERYERMPFVKTGCDTFDKYEKNVIDFMDTLK 212
           FD+ + YER P    G    + YE+   +++D  K
Sbjct: 256 FDETKLYERAPPETAGIGKPENYEELDKEYVDAAK 290


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 265  RSRSDFSLKTILDKPSFILSVSIKSITFFSYLSNVSHPVL 146
            R+++ +SL        FI  ++ +   F +YL   SHP+L
Sbjct: 2266 RNKTRWSLVIAEPYNDFIAEIAPEGEEFLTYLRKHSHPML 2305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,484
Number of Sequences: 5004
Number of extensions: 28451
Number of successful extensions: 95
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)